Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 1.2e-126 456.4 229 100.0
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 5.1e-112 407.9 229 88.2
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 2.2e-107 392.5 228 85.5
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 2.2e-99 365.9 221 81.9
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 8.4e-99 364.0 217 82.9
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 8.2e-94 347.4 176 98.9
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.2e-92 343.6 217 77.4
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 5.5e-90 334.7 230 73.5
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 2.1e-89 332.8 217 75.6
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 3.6e-89 332.0 217 75.6
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 3.0e-88 328.9 220 75.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.1e-87 327.0 217 75.6
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 5.7e-87 324.7 224 72.3
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 2.2e-86 322.8 217 73.7
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 2.4e-85 319.3 216 72.7
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 4.1e-85 318.5 218 72.5
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 5.9e-84 314.7 176 88.6
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 5.9e-84 314.7 218 71.6
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.0e-83 313.9 221 70.1
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 2.2e-83 312.8 214 71.5
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.2e-83 312.8 216 73.1
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 3.8e-83 312.0 224 69.2
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.5e-82 309.3 217 71.9
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.5e-82 309.3 217 70.5
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.5e-82 309.3 217 70.5
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.5e-82 309.3 217 70.5
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 2.5e-82 309.3 217 70.5
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 3.2e-82 308.9 217 70.5
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 7.2e-82 307.8 217 70.5
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.6e-81 306.6 228 67.5
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.6e-81 306.6 202 74.8
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.6e-81 306.6 213 70.4
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.7e-81 305.8 213 70.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 3.6e-81 305.4 222 68.9
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 7.9e-81 304.3 217 71.4
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.4e-80 303.5 218 69.3
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.8e-80 303.1 217 71.0
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 3.0e-80 302.4 217 68.7
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 5.1e-80 301.6 211 71.1
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 8.8e-80 300.8 217 70.5
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.5e-79 300.1 217 69.1
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 4.4e-79 298.5 217 68.2
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 7.4e-79 297.7 217 67.7
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 9.7e-79 297.4 220 65.9
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 9.7e-79 297.4 221 67.0
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.3e-78 297.0 217 68.7
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 1.7e-78 296.6 214 64.0
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 2.8e-78 295.8 215 65.6
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 2.8e-78 295.8 167 86.2
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 3.7e-78 295.4 213 66.7
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 3.7e-78 295.4 217 65.4
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 4.8e-78 295.0 217 68.2
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 4.8e-78 295.0 219 67.1
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 6.3e-78 294.7 216 66.2
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 6.3e-78 294.7 211 69.2
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 6.3e-78 294.7 217 68.2
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 6.3e-78 294.7 217 66.8
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 1.1e-77 293.9 216 66.2
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 2.4e-77 292.7 225 62.7
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.4e-77 292.7 212 65.1
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 7.0e-77 291.2 216 65.3
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 9.1e-77 290.8 219 65.3
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 9.1e-77 290.8 217 66.4
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.2e-76 290.4 213 66.7
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-76 290.4 222 63.1
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-76 290.4 216 65.3
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.2e-76 290.4 216 65.3
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 2.0e-76 289.7 228 63.6
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 7.7e-76 287.7 211 66.4
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.0e-75 287.3 214 65.0
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.0e-75 287.3 217 64.5
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.3e-75 287.0 212 64.2
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.7e-75 286.6 220 64.1
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 2.9e-75 285.8 214 64.5
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 3.8e-75 285.4 214 64.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 3.8e-75 285.4 205 67.8
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 5.0e-75 285.0 214 64.5
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 6.5e-75 284.6 214 65.0
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.1e-74 283.9 217 64.5
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 1.1e-74 283.9 214 63.6
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 3.2e-74 282.3 222 63.5
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.2e-73 280.4 214 63.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.6e-73 280.0 211 63.5
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.7e-73 278.5 214 63.1
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 6.1e-73 278.1 218 64.2
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.0e-72 277.3 212 64.2
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 3.0e-72 275.8 216 66.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 7.4e-71 271.2 176 77.8
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 9.7e-71 270.8 274 55.1
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.2e-70 269.6 217 61.3
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.2e-70 269.6 217 61.3
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 2.8e-70 269.2 214 59.3
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.8e-69 266.5 198 66.2
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.1e-69 265.8 200 63.0
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 5.3e-69 265.0 184 73.4
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 7.0e-69 264.6 219 61.2
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.2e-68 263.8 212 59.9
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 1.6e-68 263.5 219 60.7
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.0e-67 260.8 211 62.6
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 1.3e-67 260.4 217 60.4
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.3e-67 260.4 213 58.7
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.7e-67 260.0 200 65.0
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 5.0e-67 258.5 200 64.0
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.1e-66 257.3 217 59.4
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.9e-66 256.5 217 60.4
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.2e-66 255.8 200 62.0
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.8e-64 250.0 148 82.4
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 5.2e-64 248.4 207 59.4
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 5.2e-64 248.4 214 59.8
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 8.8e-64 247.7 222 56.3
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 3.4e-63 245.7 150 81.3
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 4.4e-63 245.4 207 59.9
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-62 243.8 222 56.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.3e-62 243.8 209 59.8
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 1.7e-62 243.4 169 70.4
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 3.1e-61 239.2 164 72.0
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.7e-59 233.4 205 56.1
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.7e-59 233.4 205 56.1
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 7.2e-58 228.0 218 53.2
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-57 227.3 213 53.1
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.1e-57 226.5 168 64.3
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 4.7e-57 225.3 208 57.2
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 5.2e-56 221.9 217 54.8
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.4e-55 219.2 216 51.4
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.3e-54 217.2 222 50.0
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 7.0e-53 211.5 169 61.5
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.0e-53 211.5 218 52.3
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 2.3e-51 206.5 218 52.8
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 2.9e-51 206.1 215 47.4
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.5e-50 203.0 208 51.4
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 5.5e-50 201.8 211 51.7
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.2e-47 194.1 201 50.7
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 5.7e-47 191.8 219 44.7
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.5e-44 182.6 218 48.6
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.9e-42 176.8 152 55.3
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.1e-41 173.3 213 46.5
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 4.4e-39 165.6 220 40.5
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 7.5e-39 164.9 112 78.6
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.7e-38 163.7 199 45.7
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 3.7e-38 162.5 213 40.4
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 4.9e-38 162.2 109 72.5
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 6.4e-38 161.8 94 78.7
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-35 154.1 219 38.8
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 5.6e-34 148.7 127 62.2
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 8.0e-33 144.8 304 30.3
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.3e-32 143.3 204 38.2
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 2.0e-31 140.2 205 37.6
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 2.2e-30 136.7 89 75.3
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 6.0e-28 128.6 97 63.9
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.1e-27 125.6 174 44.3
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 9.5e-26 121.3 88 69.3
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 2.0e-23 113.6 127 45.7
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 5.1e-19 99.0 90 54.4
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 6.4e-14 82.0 200 34.5
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.6e-12 77.4 65 61.5
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.0e-11 73.2 88 45.5
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 3.8e-06 56.2 50 54.0
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 4.9e-06 55.8 43 55.8


User provided reference genes

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