Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 2.4e-44 182.6 114 100.0
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 2.8e-32 142.5 114 81.6
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 2.6e-30 136.0 114 63.2
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 2.9e-29 132.5 115 62.6
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 1.1e-28 130.6 114 59.6
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 1.9e-28 129.8 114 61.4
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 8.6e-26 120.9 114 55.3
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 8.1e-24 114.4 114 50.9
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 3.1e-23 112.5 114 53.5
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 8.9e-23 110.9 116 54.3
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 1.2e-22 110.5 114 51.8
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 1.5e-22 110.2 114 52.6
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 2.6e-22 109.4 114 52.6
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 1.7e-21 106.7 114 52.6
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 2.2e-21 106.3 114 52.6
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.9e-21 105.9 72 63.9
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 3.8e-21 105.5 112 52.7
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 8.4e-21 104.4 113 49.6
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.2e-19 100.5 118 48.3
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 1.2e-19 100.5 113 46.0
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.6e-19 100.1 114 50.0
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 2.1e-19 99.8 114 50.9
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 2.7e-19 99.4 113 49.6
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 3.5e-19 99.0 114 49.1
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 4.6e-19 98.6 114 49.1
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 6.0e-19 98.2 114 50.0
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 7.8e-19 97.8 70 60.0
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.0e-18 97.4 114 49.1
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 1.3e-18 97.1 74 62.2
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 3.9e-18 95.5 71 59.2
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 5.1e-18 95.1 70 60.0
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 6.6e-18 94.7 73 61.6
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 6.6e-18 94.7 114 46.5
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 6.6e-18 94.7 111 46.8
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 1.1e-17 94.0 50 82.0
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.9e-17 93.2 71 63.4
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 1.9e-17 93.2 114 45.6
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 2.5e-17 92.8 78 61.5
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 2.5e-17 92.8 114 48.2
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.3e-17 92.4 73 60.3
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 2.8e-16 89.4 70 54.3
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 3.6e-16 89.0 117 54.7
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 1.4e-15 87.0 113 43.4
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 1.8e-15 86.7 122 46.7
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.8e-15 86.7 110 46.4
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 1.8e-15 86.7 68 55.9
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 1.8e-15 86.7 70 54.3
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 3.1e-15 85.9 113 45.1
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 5.3e-15 85.1 122 44.3
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 6.9e-15 84.7 81 55.6
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 6.9e-15 84.7 109 42.2
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 9.0e-15 84.3 118 44.9
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 1.5e-14 83.6 115 44.3
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.6e-14 82.8 122 44.3
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.4e-14 82.0 122 44.3
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 4.4e-14 82.0 122 44.3
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 4.4e-14 82.0 109 45.9
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 5.8e-14 81.6 114 44.7
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 5.8e-14 81.6 122 44.3
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 5.8e-14 81.6 114 43.9
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 7.6e-14 81.3 114 44.7
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.6e-14 81.3 122 44.3
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 9.9e-14 80.9 81 53.1
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 9.9e-14 80.9 122 43.4
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 9.9e-14 80.9 122 43.4
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 9.9e-14 80.9 111 42.3
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 1.7e-13 80.1 63 60.3
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 2.2e-13 79.7 120 42.5
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 2.9e-13 79.3 115 42.6
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 2.9e-13 79.3 78 56.4
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 6.4e-13 78.2 59 61.0
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 8.4e-13 77.8 121 42.1
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 8.4e-13 77.8 60 61.7
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 8.4e-13 77.8 122 42.6
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 8.4e-13 77.8 122 42.6
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.1e-12 77.4 122 41.8
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.1e-12 77.4 66 57.6
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 1.4e-12 77.0 78 53.8
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.4e-12 77.0 122 42.6
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.4e-12 77.0 60 63.3
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.9e-12 76.6 78 51.3
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.9e-12 76.6 77 51.9
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 2.4e-12 76.3 48 68.8
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 2.4e-12 76.3 120 41.7
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 3.2e-12 75.9 78 50.0
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 3.2e-12 75.9 78 50.0
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 3.2e-12 75.9 78 50.0
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 4.2e-12 75.5 120 40.8
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 5.4e-12 75.1 78 50.0
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 5.4e-12 75.1 120 40.8
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 1.2e-11 73.9 78 52.6
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.6e-11 73.6 114 42.1
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.6e-11 73.6 120 40.8
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 1.6e-11 73.6 48 68.8
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 7.9e-11 71.2 79 50.6
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 7.9e-11 71.2 47 61.7
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 3.0e-10 69.3 46 60.9
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 1.1e-09 67.4 71 46.5
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 1.1e-09 67.4 71 46.5
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 1.6e-08 63.5 55 50.9
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 6.9e-07 58.2 113 36.3
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 7.6e-06 54.7 40 52.5


User provided reference genes

Program Settings