Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.8e-120 436.0 239 100.0
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 4.2e-93 345.1 235 82.6
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 9.8e-90 334.0 236 82.2
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.1e-80 303.9 231 73.6
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 2.5e-77 292.7 239 73.2
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 4.4e-74 282.0 233 72.1
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.3e-70 269.6 228 67.5
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 2.3e-70 269.6 235 68.1
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.5e-69 266.2 149 96.0
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.1e-67 260.8 245 66.5
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 7.5e-66 254.6 230 65.7
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 7.5e-66 254.6 210 69.0
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.9e-65 251.9 228 67.1
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.1e-64 250.8 242 59.9
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 1.4e-64 250.4 227 65.6
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 3.2e-64 249.2 227 63.0
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 3.2e-64 249.2 224 65.6
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 5.4e-64 248.4 228 65.8
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 9.2e-64 247.7 247 62.8
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.2e-63 247.3 223 64.6
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 2.7e-63 246.1 232 65.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 4.6e-63 245.4 227 62.1
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 4.6e-63 245.4 225 65.3
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 6.0e-63 245.0 236 62.7
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 6.6e-62 241.5 186 70.4
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 6.6e-62 241.5 230 63.5
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 8.6e-62 241.1 225 63.6
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.5e-61 237.7 237 61.2
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.2e-60 237.3 190 70.5
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.6e-60 236.9 221 64.7
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 2.1e-60 236.5 227 61.7
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 2.1e-60 236.5 226 63.3
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.1e-60 236.5 225 63.6
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.8e-60 236.1 188 67.0
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 2.8e-60 236.1 227 61.7
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 2.8e-60 236.1 224 61.6
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 6.2e-60 235.0 191 69.6
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 6.2e-60 235.0 199 68.8
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.1e-59 234.2 223 62.3
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.4e-59 233.8 224 62.5
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.8e-59 233.4 183 72.7
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.3e-59 233.0 226 62.8
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 4.0e-59 232.3 224 62.1
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 5.2e-59 231.9 193 68.9
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.2e-58 230.7 217 61.8
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.4e-58 228.8 229 62.4
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 4.4e-58 228.8 224 59.8
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 7.5e-58 228.0 225 60.4
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 9.9e-58 227.6 232 61.2
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 9.9e-58 227.6 191 68.6
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.3e-57 227.3 223 60.5
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 2.9e-57 226.1 190 65.8
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 3.7e-57 225.7 249 59.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.4e-56 223.8 194 65.5
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.2e-56 222.6 226 57.5
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.2e-55 220.7 217 61.8
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.6e-55 220.3 233 59.2
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 4.6e-55 218.8 199 65.8
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 4.6e-55 218.8 222 56.3
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 2.3e-54 216.5 195 65.1
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.5e-53 213.8 217 59.0
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 2.5e-53 213.0 211 59.7
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.3e-53 212.2 222 57.2
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 5.6e-53 211.8 210 63.3
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.1e-52 209.9 187 64.2
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.8e-52 209.5 220 57.3
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.1e-51 207.6 163 68.7
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 4.0e-51 205.7 250 54.8
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 5.2e-51 205.3 223 55.6
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 5.2e-51 205.3 178 65.2
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 5.2e-51 205.3 178 65.2
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 5.2e-51 205.3 178 65.2
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 6.8e-51 204.9 240 55.8
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 6.8e-51 204.9 244 56.1
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 7.6e-50 201.4 218 57.3
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 9.9e-50 201.1 225 57.3
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 2.9e-49 199.5 238 57.6
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 6.4e-49 198.4 188 62.8
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 6.4e-49 198.4 222 54.1
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 8.4e-49 198.0 195 59.5
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.1e-48 197.6 231 53.2
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.9e-48 196.8 223 54.7
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-47 194.1 190 56.8
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.6e-47 193.7 190 56.8
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-47 193.4 209 56.0
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 2.1e-47 193.4 209 56.0
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 3.5e-47 192.6 220 51.8
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 6.0e-47 191.8 220 55.0
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.7e-46 190.3 225 52.0
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.7e-46 190.3 225 52.0
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.7e-46 190.3 214 56.5
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.7e-46 190.3 233 51.9
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.7e-46 190.3 197 57.9
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 2.3e-46 189.9 232 53.4
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 2.3e-46 189.9 150 70.7
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 5.1e-46 188.7 209 55.5
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 6.6e-46 188.3 179 58.1
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 2.5e-45 186.4 209 54.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.5e-45 186.4 235 52.8
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 2.5e-45 186.4 214 53.3
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-44 183.3 239 51.5
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 2.1e-44 183.3 176 59.1
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 2.8e-44 183.0 231 50.6
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 4.7e-44 182.2 239 49.8
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 4.7e-44 182.2 231 49.8
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.7e-44 182.2 169 59.8
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-43 181.0 206 53.4
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.4e-43 180.6 206 53.4
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.8e-43 180.3 229 51.5
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.4e-43 179.9 198 54.5
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 1.2e-42 177.6 188 55.3
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.5e-42 177.2 165 59.4
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 4.4e-42 175.6 148 67.6
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 9.9e-42 174.5 233 48.9
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 6.4e-41 171.8 209 49.3
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 1.2e-39 167.5 227 47.6
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.6e-39 167.2 120 73.3
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 7.8e-39 164.9 217 49.8
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.3e-38 164.1 234 45.7
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-37 161.0 179 54.2
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.6e-36 157.1 142 62.0
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 8.1e-36 154.8 142 59.2
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.1e-35 154.5 190 51.6
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 3.1e-35 152.9 134 59.7
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 2.0e-34 150.2 148 56.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 2.0e-34 150.2 222 46.8
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.9e-33 146.4 250 47.6
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 1.1e-32 144.4 104 74.0
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.4e-32 144.1 175 50.9
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 7.9e-31 138.3 134 61.9
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 6.7e-30 135.2 81 92.6
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 2.8e-28 129.8 103 68.9
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 6.2e-28 128.6 100 69.0
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 2.4e-24 116.7 204 37.7
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 4.0e-19 99.4 111 53.2
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 4.5e-18 95.9 190 34.7
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 1.0e-17 94.7 86 62.8
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 2.9e-17 93.2 62 77.4
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 5.5e-16 89.0 66 71.2
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 7.1e-16 88.6 128 39.8
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.7e-15 86.7 103 49.5
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 4.6e-15 85.9 164 34.1
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 7.9e-15 85.1 123 45.5
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 9.0e-11 71.6 62 66.1
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 6.5e-09 65.5 189 26.5
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 2.5e-08 63.5 210 28.1
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 1.0e-06 58.2 88 35.2
Lsat_1_v5_gn_6_76141 Lactuca sativa HOM05D002282 ORTHO05D002403 1.4e-06 57.8 100 33.0
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 6.7e-06 55.5 82 35.4
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 8.8e-06 55.1 231 24.7


User provided reference genes

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