Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.8e-145 519.2 258 100.0
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 6.0e-93 344.7 257 72.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 2.9e-87 325.9 258 69.8
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.3e-83 311.2 260 67.3
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.2e-72 277.3 258 61.2
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.1e-65 252.7 260 60.4
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.7e-63 246.9 255 57.3
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 7.1e-62 241.5 255 57.3
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 9.0e-57 224.6 219 57.5
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 3.1e-41 172.9 265 46.0
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.1e-41 172.6 263 45.6
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.5e-40 170.6 256 46.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 7.7e-40 168.3 253 45.5
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.9e-39 166.4 253 45.5
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 6.5e-39 165.2 262 45.0
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.5e-38 163.3 253 43.1
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.2e-38 161.8 255 45.1
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.6e-37 159.5 259 43.2
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.8e-36 157.1 256 39.1
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 5.7e-35 152.1 259 41.7
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.3e-34 151.0 256 42.2
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.4e-33 147.5 253 39.9
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.4e-33 146.7 260 42.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 7.7e-32 141.7 251 39.0
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-31 140.6 261 41.4
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.8e-31 139.4 270 36.7
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 3.8e-31 139.4 262 38.5
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 5.0e-31 139.0 270 39.3
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 8.5e-31 138.3 270 36.7
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 7.2e-30 135.2 214 41.1
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 9.4e-30 134.8 215 39.5
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.6e-29 132.9 257 36.6
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.7e-29 132.5 261 37.2
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.9e-29 131.7 252 36.9
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-28 130.6 267 37.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.0e-28 129.8 262 38.5
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 3.0e-28 129.8 263 41.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 3.9e-28 129.4 261 35.2
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.9e-28 129.4 264 35.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 8.8e-28 128.3 253 35.6
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.0e-27 127.1 225 40.9
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.3e-27 126.3 251 36.7
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 5.7e-27 125.6 254 38.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 5.7e-27 125.6 251 35.9
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 5.7e-27 125.6 251 35.9
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.7e-27 124.8 260 37.3
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 9.7e-27 124.8 264 36.7
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.3e-26 124.4 255 37.3
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-26 123.6 258 37.2
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.2e-26 123.6 262 37.8
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.8e-26 123.2 255 36.1
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.8e-26 123.2 255 37.3
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.7e-26 122.9 260 33.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 4.8e-26 122.5 261 36.8
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.2e-26 121.7 266 35.0
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-25 121.3 261 36.8
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.4e-25 120.9 256 34.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-25 120.9 261 36.4
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.4e-25 120.9 226 37.6
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.4e-25 120.9 256 37.1
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.4e-25 120.9 260 34.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.4e-25 120.2 274 36.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.4e-25 120.2 254 35.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.4e-25 120.2 260 35.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 3.1e-25 119.8 264 36.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 4.1e-25 119.4 265 37.7
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 4.1e-25 119.4 209 39.2
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.3e-25 119.0 270 35.9
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 5.3e-25 119.0 253 36.0
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 7.0e-25 118.6 263 35.7
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 7.0e-25 118.6 270 35.9
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.6e-24 117.5 248 35.9
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.6e-24 116.7 269 34.2
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.5e-24 116.3 268 34.0
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 4.5e-24 115.9 251 36.3
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 5.9e-24 115.5 258 33.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.7e-24 115.2 254 33.9
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.0e-23 114.8 269 35.3
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.3e-23 114.4 257 35.0
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.2e-23 113.6 268 34.0
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.8e-23 112.8 258 34.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 8.5e-23 111.7 258 36.0
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.1e-22 111.3 255 36.1
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.9e-22 110.5 257 35.0
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.5e-22 110.2 257 35.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 2.5e-22 110.2 278 33.8
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.5e-22 110.2 266 35.0
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.5e-22 110.2 264 35.2
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.2e-22 109.4 260 33.1
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 5.5e-22 109.0 261 34.5
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.5e-22 109.0 265 33.6
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 7.2e-22 108.6 273 33.7
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-21 107.8 251 36.7
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.2e-21 107.8 251 34.7
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.1e-21 107.1 252 33.3
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.1e-21 107.1 259 35.1
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.7e-21 106.7 252 33.3
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.6e-21 106.3 270 34.8
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 6.1e-21 105.5 251 31.1
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 6.1e-21 105.5 254 33.5
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 6.1e-21 105.5 210 38.6
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 6.1e-21 105.5 258 33.7
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.0e-21 105.1 211 37.0
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 8.0e-21 105.1 97 53.6
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.4e-20 104.4 251 31.9
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.8e-20 104.0 278 32.7
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.8e-20 104.0 209 36.4
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.3e-20 103.6 258 35.7
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.3e-20 103.6 257 35.8
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.0e-20 103.2 252 35.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.0e-20 103.2 245 32.7
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 4.0e-20 102.8 258 34.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 4.0e-20 102.8 255 30.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 5.2e-20 102.4 260 34.2
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 6.7e-20 102.1 260 33.8
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 6.7e-20 102.1 254 35.8
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.1e-19 101.3 260 33.8
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.1e-19 101.3 264 33.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-19 100.9 262 34.0
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-19 100.9 262 34.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.3e-19 99.8 284 32.7
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 4.4e-19 99.4 260 34.6
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.4e-19 99.4 262 32.8
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 5.7e-19 99.0 218 34.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 7.5e-19 98.6 257 33.5
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 9.7e-19 98.2 215 34.0
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.3e-18 97.8 209 33.5
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-18 97.4 264 34.8
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.2e-18 97.1 210 34.8
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.8e-18 96.7 210 34.8
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 3.7e-18 96.3 255 34.1
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 6.3e-18 95.5 281 30.2
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 6.3e-18 95.5 246 35.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 8.2e-18 95.1 246 32.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-17 94.4 254 34.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.4e-17 94.4 261 32.2
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.4e-17 94.4 254 34.3
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.4e-17 94.4 261 32.2
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 4.1e-17 92.8 229 32.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 7.0e-17 92.0 259 28.2
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 7.0e-17 92.0 254 33.9
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 9.1e-17 91.7 225 33.3
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.2e-16 91.3 257 34.2
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.2e-16 91.3 257 34.2
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.2e-16 91.3 255 32.5
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 5.9e-16 89.0 259 34.0
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 5.9e-16 89.0 259 34.0
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.3e-15 87.8 232 32.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.2e-15 87.0 258 32.9
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 5.0e-15 85.9 262 28.6
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 6.5e-15 85.5 240 32.9
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 6.5e-15 85.5 232 30.2
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.7e-13 80.1 296 28.4
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.8e-10 69.3 65 49.2
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.3e-10 68.6 65 50.8
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 8.3e-10 68.6 65 50.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.1e-09 66.6 65 49.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.8e-07 59.7 60 50.0


User provided reference genes

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