Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 2.8e-241 838.2 419 100.0
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 1.1e-221 773.1 419 91.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 1.3e-219 766.1 419 91.2
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 2.2e-217 758.8 421 90.0
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 1.6e-204 716.1 433 82.9
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 7.7e-199 697.2 433 82.2
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 4.7e-196 688.0 433 81.1
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 4.7e-196 688.0 433 81.1
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 1.0e-195 686.8 434 80.9
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 6.7e-195 684.1 433 80.8
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 2.0e-178 629.4 433 74.4
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.7e-177 626.3 433 74.4
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 2.0e-167 592.8 430 70.2
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 3.5e-167 592.0 434 70.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 7.8e-167 590.9 434 70.7
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 2.0e-162 576.2 431 69.4
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 2.6e-162 575.9 434 69.8
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 7.5e-162 574.3 427 68.4
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 2.9e-161 572.4 430 68.1
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 2.9e-161 572.4 430 68.6
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 3.7e-161 572.0 430 68.4
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 4.9e-161 571.6 436 68.1
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 1.1e-160 570.5 430 67.9
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 1.4e-160 570.1 430 68.1
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 5.4e-160 568.2 430 67.7
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 1.2e-159 567.0 391 74.4
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 3.5e-159 565.5 432 68.5
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 4.6e-159 565.1 431 68.7
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 7.8e-159 564.3 435 67.8
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 1.0e-158 563.9 435 67.1
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 3.0e-158 562.4 432 67.1
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 5.0e-158 561.6 435 67.8
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 2.5e-157 559.3 433 67.4
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.5e-157 559.3 435 65.3
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 3.3e-157 558.9 432 66.2
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 4.3e-157 558.5 433 65.4
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 3.6e-156 555.4 437 67.0
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 8.1e-156 554.3 435 65.1
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 1.8e-155 553.1 432 66.7
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 2.3e-155 552.7 427 67.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 3.1e-155 552.4 429 65.7
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.7e-153 546.6 433 65.4
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 1.4e-152 543.5 435 65.1
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.6e-151 540.0 435 64.8
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 1.6e-151 540.0 436 64.9
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 2.7e-151 539.3 422 66.1
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 4.6e-151 538.5 438 64.4
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 2.3e-150 536.2 435 64.4
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 1.1e-149 533.9 435 63.4
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 4.3e-149 531.9 435 63.2
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 5.6e-149 531.6 434 64.5
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 7.3e-149 531.2 428 63.8
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 9.5e-149 530.8 435 63.4
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 9.5e-149 530.8 430 63.5
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.1e-147 527.3 433 63.0
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 1.4e-147 526.9 433 62.8
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 3.1e-147 525.8 430 62.1
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 3.1e-147 525.8 431 62.4
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 6.8e-147 524.6 443 63.0
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 6.8e-147 524.6 443 63.0
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 8.9e-147 524.2 431 62.9
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 2.0e-146 523.1 435 62.5
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 2.0e-146 523.1 431 63.1
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 3.4e-146 522.3 433 62.8
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 5.8e-146 521.5 434 60.8
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 1.3e-145 520.4 435 62.1
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 1.7e-145 520.0 433 61.9
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 2.2e-145 519.6 433 62.8
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 2.9e-145 519.2 433 63.3
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 1.4e-144 516.9 431 61.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.9e-144 516.5 435 61.4
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 3.2e-144 515.8 431 61.7
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 3.2e-144 515.8 431 61.7
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 4.1e-144 515.4 431 61.9
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 7.1e-144 514.6 429 63.6
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 9.2e-144 514.2 429 63.6
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 3.5e-143 512.3 429 63.6
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 6.6e-142 508.1 431 61.3
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.1e-141 507.3 435 60.9
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 5.6e-141 505.0 435 60.0
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 6.2e-140 501.5 431 60.1
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 9.0e-139 497.7 429 61.3
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 1.5e-138 496.9 442 57.2
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 7.6e-138 494.6 429 61.1
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 1.4e-136 490.3 429 60.8
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 1.9e-136 490.0 430 60.0
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 4.2e-136 488.8 434 59.0
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.6e-135 486.9 390 67.7
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 2.1e-135 486.5 404 62.4
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 1.0e-134 484.2 431 58.9
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 1.9e-133 479.9 360 69.2
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 4.3e-133 478.8 417 60.2
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 2.6e-130 469.5 439 55.1
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 3.2e-128 462.6 352 67.9
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.1e-125 454.1 429 57.6
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 7.4e-117 424.9 420 54.0
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 1.3e-116 424.1 438 53.2
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 2.1e-116 423.3 327 67.9
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 2.8e-116 422.9 430 53.0
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 1.6e-108 397.1 421 54.4
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.2e-95 354.4 316 59.5
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 1.2e-90 337.8 442 44.1
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 7.7e-90 335.1 432 45.8
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.9e-89 333.2 431 44.1
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 4.2e-88 329.3 433 45.0
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 6.5e-81 305.4 252 63.9
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 5.2e-78 295.8 433 42.5
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 2.8e-76 290.0 424 42.2
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 8.2e-76 288.5 239 64.9
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 1.2e-61 241.5 273 50.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.2e-59 231.9 159 73.6
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.6e-58 231.1 420 36.0
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.5e-56 224.6 164 68.3
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 6.4e-44 182.6 484 28.7
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.4e-43 181.4 387 34.6
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.9e-43 181.0 190 52.6
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 7.0e-43 179.1 145 62.8
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 6.0e-42 176.0 117 68.4
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.1e-38 163.7 345 33.9
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 8.9e-38 162.2 159 56.0
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.7e-34 150.6 162 56.2
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.0e-30 136.7 162 50.6
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.6e-23 113.6 132 47.0
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 7.1e-19 99.4 71 64.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 3.6e-15 87.0 59 69.5
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.4e-12 75.9 180 35.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 3.7e-07 60.5 66 47.0


User provided reference genes

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