Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 3.7e-67 258.1 129 100.0
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 1.0e-64 250.0 129 96.9
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 2.9e-64 248.4 129 96.1
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 1.4e-63 246.1 129 94.6
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 3.9e-61 238.0 130 92.3
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 3.7e-59 231.5 129 87.6
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 2.4e-58 228.8 119 93.3
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 6.5e-56 220.7 129 84.5
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.9e-55 219.2 129 82.9
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 86.0
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 82.9
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 83.7
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 9.4e-55 216.9 127 83.5
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 82.2
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.1e-54 215.7 129 82.9
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 83.7
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.2
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 4.7e-54 214.5 128 81.2
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 6.1e-54 214.2 127 81.1
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 84.5
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 84.5
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 7.9e-54 213.8 128 80.5
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 80.6
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 81.4
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 79.8
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 81.4
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 81.4
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 78.3
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 79.1
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 80.6
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 8.8e-53 210.3 129 79.8
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 79.8
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 80.6
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 79.8
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 79.1
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 78.3
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 2.6e-52 208.8 127 78.7
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 2.6e-52 208.8 127 80.3
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 3.3e-52 208.4 127 80.3
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 3.3e-52 208.4 129 79.8
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 4.4e-52 208.0 128 79.7
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 7.4e-52 207.2 123 78.0
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 7.4e-52 207.2 129 79.8
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 78.3
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 78.3
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 78.3
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 1.3e-51 206.5 127 78.7
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 1.7e-51 206.1 129 82.2
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 79.1
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 79.1
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 3.7e-51 204.9 120 83.3
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 3.7e-51 204.9 127 77.2
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 4.8e-51 204.5 129 77.5
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 78.3
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 1.1e-50 203.4 127 79.5
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 1.4e-50 203.0 124 79.8
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 76.4
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.8e-50 202.6 119 83.2
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.8e-50 202.6 129 76.7
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.8e-50 202.6 129 76.7
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 81.5
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 3.1e-50 201.8 129 77.5
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 3.1e-50 201.8 129 76.7
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 3.1e-50 201.8 129 76.7
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 4.1e-50 201.4 127 78.0
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 127 76.4
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 129 76.7
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.3e-50 201.1 121 78.5
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 5.3e-50 201.1 129 76.7
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 7.0e-50 200.7 127 77.2
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 7.0e-50 200.7 119 78.2
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 7.0e-50 200.7 122 82.8
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.2e-49 199.9 119 81.5
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 1.2e-49 199.9 129 76.0
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.2e-49 199.9 119 79.0
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 3.5e-49 198.4 129 74.4
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 4.5e-49 198.0 119 81.5
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 81.5
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 7.7e-49 197.2 119 77.3
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 7.7e-49 197.2 129 74.4
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 2.2e-48 195.7 129 72.9
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 3.8e-48 194.9 122 79.5
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.1e-47 193.4 119 78.2
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 1.5e-47 193.0 121 76.9
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 1.5e-47 193.0 121 76.9
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.5e-47 193.0 129 71.3
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 1.9e-47 192.6 119 78.2
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.5e-47 192.2 129 72.9
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.5e-47 192.2 129 72.9
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 5.5e-47 191.0 129 73.6
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 7.2e-47 190.7 119 77.3
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 9.4e-47 190.3 129 69.8
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-46 189.9 119 79.8
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 8.0e-46 187.2 119 74.8
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.4e-45 186.4 119 74.8
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 1.8e-45 186.0 119 74.8
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 2.3e-45 185.7 127 70.9
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 4.0e-45 184.9 119 73.9
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.5e-44 183.0 119 71.4
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 2.6e-44 182.2 119 73.9
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 5.7e-44 181.0 128 71.1
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.3e-43 179.9 119 72.3
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 1.7e-43 179.5 113 76.1
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 6.3e-43 177.6 129 67.4
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 1.8e-42 176.0 127 69.3
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.2e-41 173.3 148 62.2
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.6e-41 172.9 117 68.4
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.5e-41 171.8 107 81.3
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 4.5e-41 171.4 128 63.3
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 7.7e-41 170.6 105 82.9
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.3e-40 169.9 146 59.6
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 5.0e-40 167.9 107 76.6
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 8.5e-40 167.2 119 68.1
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.1e-39 166.8 122 67.2
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.9e-39 166.0 119 65.5
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.2e-39 165.2 130 66.2
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 5.5e-39 164.5 119 66.4
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.7e-38 162.2 121 66.9
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 6.1e-38 161.0 133 64.7
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 6.8e-37 157.5 129 62.8
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-36 154.5 96 82.3
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.7e-35 152.9 109 75.2
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.8e-35 151.4 95 81.1
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 8.3e-35 150.6 96 80.2
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 1.5e-31 139.8 129 56.6
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 2.5e-31 139.0 143 51.0
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 3.6e-30 135.2 97 67.0
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 4.7e-30 134.8 113 53.1
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.8e-29 132.9 100 67.0
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 5.7e-28 127.9 87 73.6
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 9.8e-28 127.1 119 52.1
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 2.2e-27 125.9 141 47.5
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.7e-24 116.3 92 63.0
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 5.0e-24 114.8 113 49.6
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 9.5e-15 84.0 46 82.6
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.4e-10 68.2 39 76.9
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.1e-07 60.5 39 74.4


User provided reference genes

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