Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 2.6e-190 668.7 370 100.0
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 1.4e-106 390.6 355 72.4
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.2e-81 307.8 308 62.3
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 3.4e-81 306.2 379 57.5
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.0e-77 294.7 395 51.9
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 1.5e-76 290.8 395 53.7
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 1.2e-75 287.7 384 52.6
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.6e-75 287.3 400 52.5
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 6.2e-75 285.4 391 52.9
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.8e-74 283.9 390 51.3
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.0e-69 268.1 394 51.0
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 1.9e-68 263.8 329 56.2
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 5.2e-66 255.8 373 48.8
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 8.9e-66 255.0 383 52.5
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 8.9e-66 255.0 401 49.4
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.5e-65 254.2 405 47.4
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.9e-65 251.5 406 46.8
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.7e-64 250.8 386 50.8
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 3.7e-64 249.6 398 48.7
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 1.9e-63 247.3 401 47.1
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.4e-63 245.7 404 47.8
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 9.2e-63 245.0 384 50.3
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 1.2e-62 244.6 396 47.0
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 6.0e-62 242.3 396 47.7
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 1.3e-61 241.1 390 49.0
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.3e-61 241.1 391 46.5
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 3.3e-60 236.5 389 45.0
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 3.3e-60 236.5 378 47.4
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 4.3e-60 236.1 399 46.6
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 7.3e-60 235.3 399 48.6
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 1.2e-59 234.6 415 45.1
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 1.6e-59 234.2 410 43.7
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.6e-59 233.0 406 47.0
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 3.1e-58 229.9 383 46.7
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 4.0e-58 229.6 400 46.5
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 5.2e-58 229.2 400 48.5
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 2.0e-57 227.3 412 46.4
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 2.0e-57 227.3 399 48.4
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.9e-56 223.4 400 42.5
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 4.9e-56 222.6 403 45.9
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 6.4e-56 222.2 334 50.3
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 4.6e-54 216.1 405 42.5
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 1.3e-53 214.5 424 44.8
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 3.0e-53 213.4 393 41.5
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 4.8e-51 206.1 401 41.6
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 2.4e-50 203.8 395 39.7
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 4.0e-50 203.0 378 46.6
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 4.4e-49 199.5 389 41.1
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.4e-49 199.5 388 46.4
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 9.9e-49 198.4 333 43.2
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.4e-48 195.7 368 41.3
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.9e-47 194.1 368 41.0
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.6e-46 191.0 398 42.0
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 6.6e-45 185.7 414 37.4
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.6e-44 182.6 365 39.7
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 7.4e-44 182.2 332 41.6
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 7.4e-44 182.2 402 40.5
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 1.6e-43 181.0 381 38.6
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 2.1e-43 180.6 384 39.1
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 2.8e-43 180.3 462 36.8
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 6.2e-43 179.1 380 42.6
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.8e-42 177.6 424 38.4
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 5.8e-41 172.6 392 39.5
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.7e-40 171.0 383 36.8
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.2e-38 164.9 342 37.7
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.5e-36 157.9 400 35.8
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 9.6e-36 155.2 347 43.8
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 9.6e-36 155.2 377 36.6
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 1.1e-34 151.8 433 34.6
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.8e-34 151.0 387 34.6
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.8e-34 151.0 406 37.7
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.5e-33 147.9 344 37.2
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 7.6e-33 145.6 376 33.5
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.0e-32 145.2 383 33.2
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.2e-31 139.8 388 34.5
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.1e-30 137.5 370 35.7
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 2.1e-30 137.5 389 37.0
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 3.5e-30 136.7 300 38.0
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 7.9e-30 135.6 421 33.0
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 2.3e-29 134.0 409 32.5
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 3.9e-29 133.3 425 34.4
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.5e-28 130.6 367 36.8
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.7e-28 129.4 180 45.6
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 7.4e-28 129.0 369 30.9
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 7.4e-28 129.0 310 33.9
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 9.6e-28 128.6 299 34.4
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 2.1e-27 127.5 405 37.5
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 4.1e-26 123.2 391 32.0
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 6.9e-26 122.5 331 31.4
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 9.0e-26 122.1 342 32.2
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.0e-25 120.9 339 33.3
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 3.4e-25 120.2 225 39.1
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 3.4e-25 120.2 348 37.6
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 5.9e-25 119.4 355 32.4
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 3.8e-24 116.7 392 31.1
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 3.5e-22 110.2 372 31.2
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.0e-21 108.6 283 35.3
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.5e-20 104.8 359 30.4
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.5e-20 104.8 330 30.0
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 3.3e-20 103.6 206 40.8
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.6e-19 101.3 377 32.6
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 5.3e-18 96.3 321 29.6
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.0e-17 94.4 313 30.0
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 2.0e-17 94.4 90 53.3
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.6e-17 94.0 118 50.8
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 2.9e-16 90.5 109 56.0
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.9e-16 90.5 109 57.8
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 8.5e-16 89.0 206 37.4
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.4e-15 88.2 92 58.7
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.5e-15 86.3 202 37.6
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 1.2e-14 85.1 95 48.4
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 4.6e-14 83.2 95 60.0
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 6.1e-14 82.8 92 57.6
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 2.3e-13 80.9 93 60.2
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 2.3e-13 80.9 348 28.2
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 3.0e-13 80.5 51 84.3
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 3.0e-13 80.5 95 55.8
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 3.9e-13 80.1 170 38.8
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 3.9e-13 80.1 92 56.5
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 8.8e-13 79.0 94 59.6
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 8.8e-13 79.0 47 89.4
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.5e-12 78.2 166 40.4
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.5e-12 78.2 166 40.4
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 2.0e-12 77.8 166 39.8
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 2.0e-12 77.8 193 36.8
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 3.3e-12 77.0 44 90.9
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 3.3e-12 77.0 44 90.9
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 3.3e-12 77.0 92 56.5
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 3.3e-12 77.0 44 90.9
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 3.3e-12 77.0 92 56.5
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 7.4e-12 75.9 47 85.1
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 7.4e-12 75.9 47 85.1
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.3e-11 75.1 93 53.8
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-11 75.1 93 53.8
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.7e-11 74.7 93 55.9
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 6.3e-11 72.8 140 37.1
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 2.4e-10 70.9 322 26.4
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 3.1e-10 70.5 184 34.8
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 3.1e-10 70.5 406 26.6
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.5e-09 68.2 242 33.9
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.5e-09 66.6 306 29.7
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 4.5e-09 66.6 250 32.4
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 1.4e-07 61.6 340 25.0


User provided reference genes

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