Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 1.2e-49 199.5 99 100.0
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 1.8e-45 185.7 99 92.9
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 1.4e-42 176.0 99 86.9
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 2.9e-40 168.3 99 81.8
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 3.2e-39 164.9 99 82.8
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 3.4e-36 154.8 96 78.1
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 6.3e-35 150.6 97 73.2
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.8e-34 149.1 99 75.8
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 8.9e-29 130.2 99 67.7
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 2.2e-27 125.6 100 62.0
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 1.6e-25 119.4 100 59.0
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 7.3e-23 110.5 103 59.2
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 9.5e-23 110.2 70 74.3
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 6.2e-22 107.5 79 68.4
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 6.8e-21 104.0 99 57.6
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 8.9e-21 103.6 104 54.8
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 1.5e-20 102.8 104 54.8
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.4e-20 101.7 103 57.3
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.4e-20 101.7 103 57.3
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.7e-19 98.2 103 55.3
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 8.3e-19 97.1 83 56.6
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 2.4e-18 95.5 104 56.7
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 4.1e-18 94.7 97 52.6
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.6e-17 92.8 79 58.2
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 2.0e-17 92.4 99 53.5
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 2.7e-17 92.0 100 49.0
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 2.7e-17 92.0 97 49.5
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 2.7e-17 92.0 98 51.0
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 2.7e-17 92.0 106 50.0
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 3.5e-17 91.7 105 50.5
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.5e-17 91.7 71 64.8
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 4.6e-17 91.3 105 50.5
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 7.8e-17 90.5 105 49.5
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 7.8e-17 90.5 64 64.1
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 1.3e-16 89.7 105 48.6
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 1.7e-16 89.4 101 49.5
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 2.3e-16 89.0 69 60.9
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 3.9e-16 88.2 91 51.6
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 3.9e-16 88.2 88 54.5
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 5.0e-16 87.8 64 67.2
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 5.0e-16 87.8 99 49.5
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 8.6e-16 87.0 100 50.0
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.1e-15 86.7 99 49.5
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.1e-15 86.7 99 49.5
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 1.1e-15 86.7 108 48.1
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 1.1e-15 86.7 101 48.5
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 2.5e-15 85.5 113 43.4
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 3.3e-15 85.1 90 50.0
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 7.3e-15 84.0 92 47.8
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 9.5e-15 83.6 70 58.6
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 9.5e-15 83.6 64 60.9
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.6e-14 82.8 64 59.4
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.6e-14 82.8 78 52.6
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 2.1e-14 82.4 64 60.9
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 2.1e-14 82.4 64 65.6
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 3.6e-14 81.6 67 61.2
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 6.2e-14 80.9 99 46.5
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 1.1e-13 80.1 65 60.0
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 8.9e-13 77.0 112 41.1
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 8.9e-13 77.0 64 60.9
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 2.0e-12 75.9 101 42.6
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 7.5e-12 73.9 66 57.6
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.7e-11 72.8 81 46.9
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 8.3e-11 70.5 69 53.6
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 1.4e-10 69.7 78 51.3
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 4.1e-10 68.2 62 51.6
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 7.1e-10 67.4 64 53.1
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 2.1e-09 65.9 62 56.5
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 3.5e-09 65.1 65 50.8
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 4.6e-09 64.7 64 53.1
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 1.0e-08 63.5 64 48.4
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 1.0e-08 63.5 71 45.1
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.3e-08 62.4 70 47.1
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 3.0e-08 62.0 64 46.9
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 3.0e-08 62.0 64 48.4
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 3.0e-08 62.0 70 47.1
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 6.6e-08 60.8 69 44.9
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 8.6e-08 60.5 64 46.9
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 8.6e-08 60.5 64 50.0
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 1.1e-07 60.1 69 46.4
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 1.1e-07 60.1 69 46.4
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.1e-07 60.1 64 50.0
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.5e-07 59.7 64 48.4
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 1.5e-07 59.7 64 48.4
Lj5g0009601 Lotus japonicus HOM05D001004 ORTHO05D000653 1.9e-07 59.3 64 46.9
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 1.9e-07 59.3 64 46.9
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 1.9e-07 59.3 64 48.4
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 1.9e-07 59.3 64 45.3
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 2.5e-07 58.9 64 45.3
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 2.5e-07 58.9 64 50.0
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 3.3e-07 58.5 71 47.9
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 3.3e-07 58.5 64 48.4
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 4.3e-07 58.2 65 52.3
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 4.3e-07 58.2 64 46.9
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 4.3e-07 58.2 64 45.3
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 4.3e-07 58.2 66 42.4
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 5.6e-07 57.8 64 48.4
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 5.6e-07 57.8 64 46.9
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 5.6e-07 57.8 64 43.8
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 7.3e-07 57.4 66 45.5
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 7.3e-07 57.4 67 44.8
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 9.5e-07 57.0 64 45.3
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.2e-06 56.6 66 45.5
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.2e-06 56.6 68 44.1
Hma1.2p1_0310F.1_g120950 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 1.2e-06 56.6 64 43.8
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 1.2e-06 56.6 64 43.8
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 1.6e-06 56.2 71 45.1
FvH4_4g02840 Fragaria vesca HOM05D001004 ORTHO05D000653 1.6e-06 56.2 60 46.7
FAN12G0040 Fragaria x ananassa HOM05D001004 ORTHO05D000653 1.6e-06 56.2 60 46.7
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 1.6e-06 56.2 64 50.0
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.6e-06 56.2 68 44.1
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 1.6e-06 56.2 66 40.9
Sed0010846 Sechium edule HOM05D001004 ORTHO05D000653 1.6e-06 56.2 65 49.2
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 1.6e-06 56.2 69 43.5
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.1e-06 55.8 66 47.0
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.1e-06 55.8 71 40.8
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 2.1e-06 55.8 64 46.9
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 2.1e-06 55.8 64 43.8
Hma1.2p1_0310F.1_g120940 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 2.8e-06 55.5 64 42.2
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.8e-06 55.5 64 42.2
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.8e-06 55.5 64 42.2
QL06p015871 Quercus lobata HOM05D001004 ORTHO05D000653 2.8e-06 55.5 63 46.0
arahy.Tifrunner.gnm1.ann1.T5EZBY Arachis hypogaea HOM05D001004 ORTHO05D000653 3.6e-06 55.1 71 42.3
HanXRQChr01g0014541 Helianthus annuus HOM05D001004 ORTHO05D000653 3.6e-06 55.1 81 40.7
Prupe.1G032500 Prunus persica HOM05D001004 ORTHO05D000653 3.6e-06 55.1 71 42.3
Prupe.I000300 Prunus persica HOM05D001004 ORTHO05D000653 3.6e-06 55.1 64 43.8
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 4.7e-06 54.7 66 43.9
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 4.7e-06 54.7 66 43.9
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 4.7e-06 54.7 66 43.9
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 4.7e-06 54.7 64 43.8
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 4.7e-06 54.7 64 42.2
SMO351G0292 Selaginella moellendorffii HOM05D007791 ORTHO05D000653 4.7e-06 54.7 65 46.2
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 4.7e-06 54.7 62 43.5
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 6.2e-06 54.3 66 45.5
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 6.2e-06 54.3 66 45.5
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 6.2e-06 54.3 64 43.8
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 6.2e-06 54.3 64 45.3
Sed0001135 Sechium edule HOM05D001004 ORTHO05D000653 6.2e-06 54.3 68 45.6
AT2G38870 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 8.1e-06 53.9 71 40.8
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 8.1e-06 53.9 64 45.3
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 8.1e-06 53.9 64 46.9
HanXRQChr01g0014511 Helianthus annuus HOM05D001004 ORTHO05D000653 8.1e-06 53.9 71 42.3
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 8.1e-06 53.9 64 45.3
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 8.1e-06 53.9 68 41.2
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 8.1e-06 53.9 64 45.3
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 8.1e-06 53.9 64 45.3


User provided reference genes

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