Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 5.6e-140 501.1 290 100.0
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 9.0e-114 414.1 236 91.1
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 3.2e-111 405.6 233 89.7
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 4.3e-108 395.2 233 86.3
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 5.7e-108 394.8 232 87.9
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 8.2e-107 391.0 291 73.9
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 4.8e-99 365.2 229 79.5
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.1e-98 364.0 224 83.5
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 2.0e-97 359.8 234 78.2
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 1.0e-96 357.5 230 80.0
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 1.3e-96 357.1 226 81.0
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 3.8e-96 355.5 226 81.0
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 1.4e-95 353.6 235 77.9
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.4e-95 353.6 229 79.0
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 6.1e-94 348.2 230 77.0
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 7.9e-94 347.8 234 76.9
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 2.6e-92 342.8 234 76.1
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 4.4e-92 342.0 234 74.8
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 7.4e-92 341.3 227 75.3
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.3e-91 340.5 239 74.1
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.7e-91 340.1 232 73.7
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 3.7e-91 339.0 225 76.4
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 8.2e-91 337.8 230 74.8
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.1e-90 337.4 230 75.2
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 1.8e-90 336.7 222 78.4
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 1.8e-90 336.7 230 74.8
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 4.1e-90 335.5 231 72.3
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 4.1e-90 335.5 230 74.3
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 5.3e-90 335.1 235 73.2
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 9.1e-90 334.3 231 74.9
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 2.0e-89 333.2 235 73.2
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 2.0e-89 333.2 235 72.8
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 2.0e-89 333.2 224 75.9
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 2.0e-89 333.2 233 73.4
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 2.6e-89 332.8 235 72.3
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 2.6e-89 332.8 235 72.3
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.3e-88 330.5 231 71.4
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 1.7e-88 330.1 229 73.8
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 6.5e-88 328.2 229 73.8
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 6.5e-88 328.2 223 74.4
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 6.5e-88 328.2 201 84.6
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 8.5e-88 327.8 229 72.9
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 8.5e-88 327.8 234 70.1
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 1.1e-87 327.4 236 72.0
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 1.1e-87 327.4 230 73.0
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.9e-87 326.6 236 72.5
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 2.5e-87 326.2 229 72.9
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 3.2e-87 325.9 227 73.6
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 5.5e-87 325.1 234 69.2
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 7.2e-87 324.7 225 73.3
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 9.4e-87 324.3 229 69.4
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 9.4e-87 324.3 230 70.4
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 1.2e-86 323.9 223 73.5
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 6.1e-86 321.6 224 72.8
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 7.9e-86 321.2 229 71.6
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 1.4e-85 320.5 229 71.6
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 1.4e-85 320.5 231 71.0
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 1.4e-85 320.5 234 71.8
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.4e-85 320.5 201 83.6
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 3.9e-85 318.9 229 71.2
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 3.9e-85 318.9 225 72.0
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 3.9e-85 318.9 228 72.8
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 3.7e-83 312.4 241 68.5
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 1.2e-81 307.4 228 66.2
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 1.6e-81 307.0 261 61.7
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 4.5e-81 305.4 227 70.9
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 1.0e-80 304.3 234 66.7
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.3e-80 303.9 233 67.0
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 1.3e-80 303.9 236 65.7
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 3.2e-79 299.3 220 67.7
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 4.2e-79 298.9 223 68.6
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 4.2e-79 298.9 226 66.8
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 3.0e-77 292.7 224 67.4
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 4.0e-77 292.4 229 67.2
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 5.7e-76 288.5 319 53.0
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 2.2e-75 286.6 192 75.5
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 7.7e-73 278.1 238 61.8
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 5.0e-72 275.4 190 74.7
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 9.4e-71 271.2 184 76.1
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 2.1e-70 270.0 223 65.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 8.8e-69 264.6 199 67.8
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 2.8e-67 259.6 192 69.3
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 6.5e-64 248.4 231 60.2
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 3.2e-63 246.1 239 56.9
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 7.2e-63 245.0 188 67.0
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 1.4e-61 240.7 153 81.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 6.8e-61 238.4 176 67.6
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 5.7e-60 235.3 163 76.7
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 2.8e-59 233.0 226 53.5
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 6.3e-59 231.9 240 51.7
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 9.5e-55 218.0 198 61.1
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 2.1e-54 216.9 204 52.5
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 1.4e-53 214.2 144 74.3
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 3.4e-52 209.5 139 75.5
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 3.7e-51 206.1 329 43.5
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.0e-50 201.8 200 57.0
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 2.0e-49 200.3 148 67.6
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 5.9e-49 198.7 143 69.2
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 2.1e-33 147.1 180 48.9
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 1.1e-31 141.4 88 85.2
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 6.8e-29 132.1 95 67.4
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 3.4e-28 129.8 145 44.8
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 2.1e-25 120.6 264 33.3
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 3.5e-25 119.8 242 33.1
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 1.3e-19 101.3 60 83.3
Psat7g265360 Pisum sativum HOM05D007122 ORTHO05D008918 2.6e-12 77.0 54 74.1
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.1e-10 71.6 38 86.8
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.1e-10 71.6 38 86.8
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 1.1e-10 71.6 117 38.5
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 5.4e-10 69.3 38 84.2
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 2.3e-08 63.9 202 28.7
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 5.1e-08 62.8 249 24.9
QL05p084699 Quercus lobata HOM05D007122 ORTHO05D008918 2.1e-06 57.4 54 51.9
SEGI_22906 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 2.1e-06 57.4 237 27.0
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 2.8e-06 57.0 218 28.4
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 3.7e-06 56.6 76 42.1
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 3.7e-06 56.6 76 42.1
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 4.8e-06 56.2 219 28.3
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 6.2e-06 55.8 111 29.7


User provided reference genes

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