Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.0e-108 396.7 199 100.0
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.5e-75 285.8 181 79.0
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 4.2e-62 241.9 182 68.7
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.1e-57 225.3 182 64.8
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 6.9e-57 224.6 175 66.9
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 3.4e-56 222.2 175 65.1
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 6.5e-55 218.0 178 64.0
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.1e-54 217.2 175 65.1
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.2e-53 213.8 178 64.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.0e-52 210.7 183 61.7
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.4e-52 210.3 184 60.3
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 5.2e-52 208.4 174 62.1
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 4.4e-51 205.3 174 61.5
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 5.7e-51 204.9 166 60.8
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.3e-50 203.8 174 60.9
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 1.7e-50 203.4 169 60.4
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 2.8e-50 202.6 168 58.3
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.8e-50 202.6 183 57.9
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 6.3e-50 201.4 175 55.4
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.2e-50 201.1 183 56.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.4e-49 200.3 166 58.4
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.4e-49 200.3 189 59.8
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.4e-49 199.5 188 55.3
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 3.1e-49 199.1 175 54.9
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.3e-49 198.4 173 57.8
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.3e-49 198.4 172 58.1
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 5.3e-49 198.4 177 58.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 7.0e-49 198.0 175 58.3
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.2e-48 197.2 168 56.5
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.6e-48 196.8 168 58.9
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 3.8e-47 192.2 166 56.6
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.5e-46 190.3 183 54.6
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.5e-46 189.5 175 56.6
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 4.2e-46 188.7 170 60.6
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 9.4e-46 187.6 166 56.6
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.2e-45 187.2 165 55.2
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.2e-45 187.2 169 55.0
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 1.2e-45 187.2 170 58.8
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.2e-45 187.2 168 55.4
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 1.6e-45 186.8 169 55.0
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 4.7e-45 185.3 185 54.6
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 6.1e-45 184.9 170 57.1
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.4e-44 183.7 185 54.1
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.8e-44 183.3 173 54.3
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 3.0e-44 182.6 192 49.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.5e-43 180.3 168 58.3
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 2.0e-43 179.9 178 52.8
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.6e-43 179.5 181 54.1
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 4.4e-43 178.7 169 52.7
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 5.7e-43 178.3 165 56.4
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 7.5e-43 177.9 172 54.7
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 9.7e-43 177.6 174 54.0
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.2e-42 176.4 167 55.1
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 4.8e-42 175.3 171 55.0
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 6.3e-42 174.9 172 54.1
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 8.2e-42 174.5 168 57.1
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.1e-41 174.1 177 52.5
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.4e-41 173.7 172 52.9
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 9.1e-41 171.0 183 55.7
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.5e-40 169.1 176 52.3
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.8e-39 165.6 167 54.5
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 8.5e-39 164.5 165 53.3
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 1.9e-38 163.3 167 54.5
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.9e-38 163.3 165 48.5
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.5e-38 162.9 123 65.0
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 7.2e-38 161.4 198 48.0
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 9.4e-38 161.0 175 48.6
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 9.4e-38 161.0 166 50.6
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.1e-37 159.8 174 46.6
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 4.7e-37 158.7 166 50.0
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.1e-37 158.3 173 50.9
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 8.0e-37 157.9 169 50.9
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.4e-36 157.1 168 51.8
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.4e-36 157.1 165 47.3
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.2e-36 155.2 175 46.9
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 6.8e-36 154.8 165 50.3
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.8e-36 154.8 165 47.3
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 8.8e-36 154.5 166 48.2
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.2e-35 154.1 175 48.6
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.5e-35 153.7 177 49.2
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 1.5e-35 153.7 172 47.7
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 9.8e-35 151.0 259 37.1
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 9.8e-35 151.0 186 46.2
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.7e-34 149.1 169 47.3
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 8.3e-34 147.9 163 47.2
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.4e-33 147.1 181 44.8
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.8e-33 146.7 137 56.2
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 3.1e-33 146.0 176 47.2
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 3.1e-33 146.0 171 45.6
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 4.1e-33 145.6 176 44.3
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 7.0e-33 144.8 137 55.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 7.0e-33 144.8 170 46.5
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.6e-32 143.7 166 47.6
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 2.7e-32 142.9 142 55.6
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.5e-32 142.1 197 42.1
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 4.5e-32 142.1 171 45.6
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.0e-31 141.0 118 62.7
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.3e-31 140.6 144 51.4
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.1e-30 137.5 150 47.3
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 1.5e-30 137.1 175 41.1
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.9e-30 136.7 197 39.1
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 3.2e-30 136.0 167 43.1
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 3.2e-30 136.0 175 41.7
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.2e-30 136.0 190 40.5
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 4.2e-30 135.6 176 45.5
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 7.2e-30 134.8 173 45.1
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.2e-29 134.0 144 48.6
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.1e-29 133.3 115 57.4
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.1e-29 133.3 182 43.4
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 2.8e-29 132.9 190 40.5
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 4.7e-29 132.1 144 47.9
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 6.1e-29 131.7 180 40.0
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 8.0e-29 131.3 170 41.8
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.3e-28 129.8 199 38.2
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.3e-28 129.8 175 44.6
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 3.0e-28 129.4 175 42.9
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 4.0e-28 129.0 179 40.2
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 5.2e-28 128.6 191 38.7
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 6.8e-28 128.3 140 51.4
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.6e-27 126.3 137 51.1
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 7.5e-27 124.8 170 41.8
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.7e-26 123.6 174 42.0
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.7e-26 123.6 145 49.0
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.8e-26 122.9 133 48.9
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 6.3e-26 121.7 175 37.7
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 6.3e-26 121.7 125 49.6
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 4.1e-25 119.0 175 37.1
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 4.1e-25 119.0 119 50.4
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.1e-25 119.0 150 43.3
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 7.0e-25 118.2 135 47.4
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 9.2e-25 117.9 162 39.5
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 4.5e-24 115.5 164 42.1
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.0e-23 114.4 120 49.2
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 8.6e-23 111.3 99 55.6
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 4.3e-22 109.0 129 46.5
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 4.3e-22 109.0 147 41.5
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.2e-21 107.5 175 36.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-21 107.5 80 62.5
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 5.2e-20 102.1 90 55.6
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 6.8e-20 101.7 118 44.9
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.5e-19 100.5 127 44.9
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.9e-18 96.3 66 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.4e-17 94.0 131 37.4
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.4e-17 93.2 137 40.9
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 5.4e-17 92.0 71 60.6
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-16 90.9 77 57.1
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.2e-16 90.9 146 39.7
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.3e-15 86.7 80 57.5
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.9e-14 83.6 95 48.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 8.0e-13 78.2 113 40.7
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.4e-12 77.4 103 42.7
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.8e-12 77.0 119 35.3
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.3e-12 76.6 168 33.9
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 4.0e-12 75.9 96 44.8
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.9e-12 74.7 183 34.4
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 1.2e-11 74.3 61 57.4
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.6e-11 73.2 161 29.8
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.7e-10 70.5 83 44.6
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.2e-08 64.3 39 74.4
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.0e-08 63.5 97 40.2
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.7e-07 60.5 52 57.7
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 2.3e-07 60.1 52 57.7
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 6.6e-07 58.5 94 36.2
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 8.6e-07 58.2 58 51.7
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 8.6e-07 58.2 95 34.7
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 3.3e-06 56.2 86 33.7
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 9.5e-06 54.7 85 41.2


User provided reference genes

Program Settings