Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 1.7e-38 162.2 81 100.0
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 1.5e-34 149.1 81 91.4
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 2.5e-29 131.7 102 71.6
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 8.0e-20 100.1 90 60.0
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 8.0e-20 100.1 96 58.3
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 1.1e-19 99.8 99 57.6
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.1e-19 99.8 95 57.9
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 1.2e-18 96.3 100 55.0
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 1.2e-18 96.3 91 63.7
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 1.5e-18 95.9 84 59.5
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 5.8e-18 94.0 97 52.6
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 9.8e-18 93.2 73 63.0
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 1.4e-16 89.4 61 67.2
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 4.1e-16 87.8 64 68.8
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 7.0e-16 87.0 72 62.5
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.2e-15 86.3 82 57.3
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 2.0e-15 85.5 79 58.2
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 6.0e-15 84.0 79 60.8
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 7.8e-15 83.6 93 50.5
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 1.3e-14 82.8 77 58.4
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.7e-14 82.4 75 57.3
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 2.3e-14 82.0 80 51.2
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.0e-14 81.6 81 54.3
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 3.0e-14 81.6 68 63.2
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.9e-14 81.3 78 56.4
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 5.0e-14 80.9 70 58.6
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 6.6e-14 80.5 66 60.6
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 8.6e-14 80.1 69 60.9
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 1.1e-13 79.7 54 70.4
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 1.1e-13 79.7 62 64.5
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.1e-13 79.7 77 55.8
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.5e-13 79.3 67 61.2
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.5e-13 78.6 95 46.3
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.5e-13 78.6 95 46.3
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 2.5e-13 78.6 95 46.3
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 2.5e-13 78.6 51 70.6
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 3.3e-13 78.2 61 70.5
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.3e-13 78.2 70 57.1
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 3.3e-13 78.2 70 57.1
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 5.6e-13 77.4 61 60.7
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 5.6e-13 77.4 61 60.7
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 5.6e-13 77.4 68 55.9
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 5.6e-13 77.4 77 58.4
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 5.6e-13 77.4 61 60.7
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 7.3e-13 77.0 81 49.4
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 9.5e-13 76.6 44 79.5
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 9.5e-13 76.6 75 56.0
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 9.5e-13 76.6 88 50.0
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.2e-12 76.3 44 75.0
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 1.6e-12 75.9 61 63.9
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 2.1e-12 75.5 78 50.0
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 2.1e-12 75.5 72 56.9
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 2.1e-12 75.5 48 75.0
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 2.8e-12 75.1 44 75.0
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 3.6e-12 74.7 75 56.0
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 3.6e-12 74.7 95 49.5
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 3.6e-12 74.7 59 66.1
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 4.7e-12 74.3 61 59.0
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 4.7e-12 74.3 61 59.0
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 4.7e-12 74.3 83 53.0
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 4.7e-12 74.3 65 63.1
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 6.2e-12 73.9 62 62.9
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 6.2e-12 73.9 62 62.9
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 6.2e-12 73.9 61 59.0
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 8.1e-12 73.6 76 53.9
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 1.1e-11 73.2 47 68.1
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.4e-11 72.8 66 59.1
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 1.4e-11 72.8 59 66.1
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.8e-11 72.4 57 59.6
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 4.0e-11 71.2 62 56.5
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 4.0e-11 71.2 48 72.9
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 5.2e-11 70.9 62 56.5
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 5.2e-11 70.9 62 56.5
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 5.2e-11 70.9 62 56.5
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 5.2e-11 70.9 62 56.5
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 5.2e-11 70.9 62 56.5
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 5.2e-11 70.9 63 58.7
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 6.8e-11 70.5 81 49.4
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 8.9e-11 70.1 80 53.8
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.2e-10 69.7 74 52.7
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 1.5e-10 69.3 64 60.9
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 1.5e-10 69.3 47 76.6
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 1.5e-10 69.3 47 76.6
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.6e-10 68.6 65 56.9
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 3.4e-10 68.2 45 71.1
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 4.4e-10 67.8 44 65.9
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 5.8e-10 67.4 72 51.4
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 7.5e-10 67.0 50 64.0
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 9.9e-10 66.6 57 56.1
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 1.3e-09 66.2 44 79.5
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.3e-09 66.2 68 51.5
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 4.9e-09 64.3 40 72.5
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 4.9e-09 64.3 46 73.9
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.4e-08 62.8 71 50.7
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 1.9e-08 62.4 47 68.1
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 4.1e-08 61.2 69 50.7
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 5.4e-08 60.8 55 52.7
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 1.6e-07 59.3 48 56.2
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.6e-07 59.3 48 56.2
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.6e-07 59.3 48 56.2
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.6e-07 59.3 48 56.2
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.6e-07 59.3 48 56.2
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.1e-07 58.9 41 70.7
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 2.7e-07 58.5 68 50.0
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.5e-07 58.2 48 56.2
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 3.5e-07 58.2 48 56.2
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 4.6e-07 57.8 61 54.1
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 6.0e-07 57.4 43 62.8
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 7.8e-07 57.0 55 54.5
HanXRQChr03g0080371 Helianthus annuus HOM05D007247 ORTHO05D009208 1.0e-06 56.6 58 50.0
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 1.3e-06 56.2 75 46.7
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.3e-06 55.5 56 48.2
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 2.3e-06 55.5 67 46.3
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.0e-06 55.1 36 69.4
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 3.0e-06 55.1 36 69.4
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 3.9e-06 54.7 69 43.5
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.9e-06 54.7 49 51.0
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.9e-06 54.7 44 61.4
SEGI_20043 Sequoiadendron giganteum HOM05D008067 ORTHO05D010226 3.9e-06 54.7 37 75.7
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 3.9e-06 54.7 42 59.5
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 5.1e-06 54.3 66 48.5
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 5.1e-06 54.3 48 54.2
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 5.1e-06 54.3 32 75.0
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 5.1e-06 54.3 63 44.4
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 6.6e-06 53.9 42 66.7


User provided reference genes

Program Settings