Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 8.1e-87 323.9 171 100.0
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.6e-79 298.5 172 91.3
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 4.7e-79 298.1 168 93.5
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 7.6e-77 290.8 173 88.4
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 5.1e-73 278.1 165 86.1
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 6.6e-73 277.7 164 86.6
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 8.7e-73 277.3 165 86.1
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 9.6e-64 247.3 169 77.5
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 2.2e-60 236.1 160 73.8
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 2.2e-60 236.1 166 75.9
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.2e-60 236.1 167 74.3
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 3.8e-60 235.3 169 68.0
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 4.9e-60 235.0 171 76.6
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 8.4e-60 234.2 161 74.5
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.1e-59 233.8 163 73.0
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.1e-59 233.8 165 71.5
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.9e-59 233.0 167 73.1
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.9e-59 233.0 167 73.1
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 4.2e-59 231.9 163 75.5
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 5.5e-59 231.5 165 70.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 9.3e-59 230.7 167 73.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.2e-58 230.3 177 72.9
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 2.7e-58 229.2 169 66.3
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 2.7e-58 229.2 161 72.7
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 3.5e-58 228.8 161 72.0
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 7.9e-58 227.6 162 69.1
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.0e-57 227.3 162 72.8
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.3e-57 226.9 159 74.8
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.3e-57 226.9 163 74.8
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 3.0e-57 225.7 162 67.9
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 8.7e-57 224.2 166 70.5
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.1e-56 223.8 154 72.7
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.9e-56 223.0 162 72.2
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.9e-56 223.0 160 70.6
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 2.5e-56 222.6 160 70.6
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 5.6e-56 221.5 162 71.0
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 7.4e-56 221.1 148 75.7
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 9.6e-56 220.7 159 71.7
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 9.6e-56 220.7 155 76.1
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.3e-55 220.3 162 71.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.3e-55 220.3 162 71.6
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.3e-55 220.3 161 73.3
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.6e-55 219.9 165 69.7
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.6e-55 219.9 165 67.3
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 2.1e-55 219.5 161 72.7
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 3.7e-55 218.8 163 69.9
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 8.1e-55 217.6 162 67.3
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 8.1e-55 217.6 153 74.5
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.4e-54 216.1 144 75.0
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.4e-54 216.1 144 75.7
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.4e-54 216.1 196 61.7
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 3.1e-54 215.7 159 70.4
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.5e-53 211.8 158 67.7
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 4.5e-53 211.8 161 68.9
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.8e-53 211.5 153 71.2
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-52 210.3 144 73.6
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.3e-52 210.3 154 70.8
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.3e-52 210.3 155 71.6
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.7e-52 209.9 146 74.7
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.2e-52 209.5 149 71.8
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.2e-52 209.5 147 74.8
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.2e-52 209.5 158 71.5
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.9e-52 209.1 158 70.9
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 2.9e-52 209.1 168 66.1
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 2.9e-52 209.1 158 70.9
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 3.8e-52 208.8 144 74.3
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.9e-52 208.4 144 72.2
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 4.9e-52 208.4 147 73.5
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 2.5e-51 206.1 161 69.6
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.5e-51 206.1 141 75.2
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 7.1e-51 204.5 156 67.9
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.1e-50 203.0 156 68.6
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 2.1e-50 203.0 193 58.0
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.7e-50 202.6 163 65.0
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 3.5e-50 202.2 151 69.5
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 4.6e-50 201.8 146 72.6
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 4.6e-50 201.8 162 66.0
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 7.9e-50 201.1 143 73.4
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.0e-49 200.7 156 66.0
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.3e-49 199.5 145 73.1
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.3e-49 199.5 145 73.1
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 3.0e-49 199.1 156 65.4
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 5.1e-49 198.4 150 72.0
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 6.7e-49 198.0 154 64.9
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 6.7e-49 198.0 156 65.4
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 8.7e-49 197.6 145 71.7
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 8.7e-49 197.6 145 71.7
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 1.1e-48 197.2 161 62.7
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.9e-48 196.4 149 71.1
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.9e-48 196.4 145 71.7
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.9e-48 196.4 149 71.1
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 1.9e-48 196.4 136 71.3
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 2.5e-48 196.1 139 74.1
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 7.4e-48 194.5 139 74.1
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 7.4e-48 194.5 149 70.5
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.3e-47 193.7 152 70.4
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.3e-47 193.7 131 76.3
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.1e-47 193.0 157 65.6
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 5.3e-46 188.3 159 61.6
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.2e-45 187.2 167 59.3
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-45 186.4 162 61.7
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 5.0e-44 181.8 125 72.8
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 8.5e-44 181.0 124 71.8
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 6.1e-42 174.9 129 73.6
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.3e-41 172.9 129 72.9
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 4.3e-40 168.7 112 80.4
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 5.7e-40 168.3 184 52.2
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.7e-40 168.3 163 56.4
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 3.7e-39 165.6 103 79.6
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 8.2e-39 164.5 101 83.2
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.8e-38 163.3 104 77.9
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 3.4e-37 159.1 104 82.7
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 4.5e-37 158.7 107 75.7
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.0e-36 157.5 127 65.4
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.1e-35 154.1 109 72.5
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.9e-35 153.3 102 76.5
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.1e-33 145.2 119 60.5
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.2e-31 139.8 110 68.2
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.4e-30 136.3 142 53.5
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.5e-29 133.7 148 45.3
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.6e-29 132.9 117 58.1
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.0e-28 131.0 102 66.7
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.9e-28 129.4 85 78.8
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 2.5e-27 126.3 83 75.9
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.8e-23 112.1 96 66.7
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.7e-18 96.3 102 56.9
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 3.6e-18 95.9 155 38.1
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.0e-17 94.4 157 42.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 5.2e-17 92.0 130 40.0
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 4.4e-16 89.0 148 37.8
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 1.4e-14 84.0 55 72.7
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.7e-13 79.7 55 70.9
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 9.4e-11 71.2 56 60.7
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.4e-09 67.4 47 70.2
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 2.3e-09 66.6 48 70.8
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 2.3e-09 66.6 48 70.8
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 1.7e-07 60.5 40 72.5


User provided reference genes

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