Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 4.7e-64 247.7 123 100.0
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.9e-37 158.7 85 88.2
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.4e-31 139.8 84 81.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.8e-31 139.4 79 83.5
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 2.4e-31 139.0 86 76.7
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 2.0e-30 136.0 84 72.6
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 3.4e-30 135.2 85 74.1
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.7e-27 125.6 87 69.0
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.6e-27 124.8 88 64.8
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.9e-25 119.4 83 65.1
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-25 119.0 87 62.1
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.3e-25 118.6 96 57.3
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 3.3e-25 118.6 85 67.1
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 4.3e-25 118.2 85 69.4
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 5.7e-25 117.9 83 62.7
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 7.4e-25 117.5 84 67.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 9.7e-25 117.1 84 63.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.3e-24 116.7 84 61.9
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.3e-24 116.7 87 58.6
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.6e-24 116.3 76 67.1
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.6e-24 116.3 76 67.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.2e-24 115.9 83 62.7
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.8e-24 115.5 86 60.5
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 3.7e-24 115.2 76 69.7
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.7e-24 115.2 86 61.6
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.7e-24 115.2 85 61.2
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.7e-24 115.2 85 61.2
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 3.7e-24 115.2 85 61.2
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.7e-24 115.2 84 61.9
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 4.8e-24 114.8 79 64.6
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.8e-24 114.8 84 61.9
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 6.3e-24 114.4 80 68.8
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 6.3e-24 114.4 92 58.7
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 6.3e-24 114.4 86 60.5
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 8.2e-24 114.0 83 61.4
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.1e-23 113.6 84 61.9
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.1e-23 113.6 82 63.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.4e-23 113.2 84 61.9
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.4e-23 113.2 88 62.5
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.4e-23 113.2 86 60.5
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.4e-23 113.2 85 58.8
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.4e-23 113.2 85 62.4
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.8e-23 112.8 84 60.7
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.8e-23 112.8 84 60.7
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.4e-23 112.5 79 63.3
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.4e-23 112.5 84 61.9
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.1e-23 112.1 86 59.3
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 3.1e-23 112.1 84 59.5
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 3.1e-23 112.1 86 59.3
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.1e-23 112.1 76 67.1
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.1e-23 111.7 84 58.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.1e-23 111.7 84 59.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 4.1e-23 111.7 85 60.0
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 5.3e-23 111.3 75 64.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.3e-23 111.3 85 63.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 6.9e-23 110.9 85 62.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 6.9e-23 110.9 83 61.4
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 6.9e-23 110.9 86 59.3
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 9.0e-23 110.5 84 59.5
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 9.0e-23 110.5 87 57.5
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 9.0e-23 110.5 86 58.1
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 9.0e-23 110.5 85 58.8
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.2e-22 110.2 84 60.7
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.2e-22 110.2 76 65.8
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.0e-22 109.4 84 56.0
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 2.0e-22 109.4 85 58.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 2.0e-22 109.4 83 61.4
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.6e-22 109.0 76 63.2
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 3.4e-22 108.6 86 57.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 3.4e-22 108.6 86 55.8
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.4e-22 108.6 86 55.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.4e-22 108.6 86 55.8
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 3.4e-22 108.6 86 55.8
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.4e-22 108.6 84 61.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 3.4e-22 108.6 84 60.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 4.5e-22 108.2 79 62.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 4.5e-22 108.2 84 60.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.5e-22 108.2 84 60.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.5e-22 108.2 85 58.8
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.5e-22 108.2 85 57.6
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 5.9e-22 107.8 84 58.3
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 7.6e-22 107.5 84 60.7
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.0e-21 107.1 87 56.3
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-21 106.7 79 60.8
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.3e-21 106.7 76 61.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.7e-21 106.3 86 58.1
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.7e-21 106.3 84 60.7
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.7e-21 106.3 85 57.6
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.9e-21 105.5 81 56.8
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.9e-21 105.5 79 60.8
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.1e-20 103.6 87 55.2
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.5e-20 102.4 76 61.8
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.5e-20 102.4 79 57.0
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.5e-20 102.4 108 48.1
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 3.2e-20 102.1 83 55.4
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 3.2e-20 102.1 75 57.3
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 5.5e-20 101.3 83 53.0
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 7.2e-20 100.9 161 39.1
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 7.2e-20 100.9 84 53.6
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.6e-19 99.8 84 52.4
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.6e-19 99.8 84 52.4
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 2.7e-19 99.0 83 51.8
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.7e-19 99.0 84 54.8
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.6e-19 98.2 86 55.8
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.0e-18 95.5 90 53.3
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 3.0e-18 95.5 78 61.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 5.1e-18 94.7 74 56.8
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.1e-18 94.7 90 53.3
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.1e-18 94.7 78 59.0
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.1e-17 93.6 84 48.8
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.9e-17 92.8 73 58.9
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 7.4e-17 90.9 79 58.2
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.7e-16 89.7 77 57.1
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.1e-15 85.1 84 48.8
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 3.4e-14 82.0 42 90.5
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.4e-14 82.0 81 53.1
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 5.9e-14 81.3 87 43.7
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.3e-13 80.1 87 43.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.8e-13 78.6 87 50.6
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.1e-11 72.8 77 46.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 4.7e-11 71.6 85 41.2
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.6e-09 65.9 46 63.0
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.3e-08 63.5 70 44.3
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.7e-08 63.2 50 56.0
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.7e-08 63.2 44 59.1
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 4.8e-08 61.6 68 47.1
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.2e-08 60.8 44 56.8
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-07 60.1 41 58.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.4e-07 59.3 42 66.7
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.4e-07 59.3 41 56.1
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.1e-07 58.9 42 57.1
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 7.0e-07 57.8 40 60.0
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 4.5e-06 55.1 43 58.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 7.7e-06 54.3 56 44.6
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 7.7e-06 54.3 44 59.1


User provided reference genes

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