Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 1.2e-194 682.9 323 100.0
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 6.6e-158 560.8 322 84.8
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 1.3e-142 510.0 322 78.0
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 5.1e-134 481.5 303 74.3
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 9.0e-131 470.7 303 72.9
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 3.4e-130 468.8 313 72.2
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 1.9e-128 463.0 257 78.6
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 6.1e-127 458.0 257 77.8
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 6.3e-124 448.0 299 70.6
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 2.2e-121 439.5 299 70.9
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 6.1e-119 431.4 326 64.1
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 5.0e-113 411.8 296 64.9
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 8.5e-113 411.0 256 72.7
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 1.9e-112 409.8 300 63.3
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 4.7e-111 405.2 276 66.3
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.0e-110 404.1 251 72.5
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 8.8e-110 401.0 273 66.7
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 8.8e-110 401.0 282 66.3
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 1.8e-107 393.3 294 63.6
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 3.1e-107 392.5 310 61.9
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 4.1e-107 392.1 310 59.0
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 4.1e-107 392.1 257 68.5
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 5.3e-107 391.7 273 66.7
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 7.0e-107 391.3 273 64.8
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 3.5e-106 389.0 282 63.5
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 3.5e-106 389.0 338 56.8
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 3.5e-106 389.0 289 63.3
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 7.7e-106 387.9 312 60.3
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 3.8e-105 385.6 260 66.5
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 5.0e-105 385.2 257 67.7
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 3.2e-104 382.5 254 68.5
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 9.4e-104 380.9 277 65.3
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 1.2e-103 380.6 299 58.5
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 2.1e-103 379.8 283 60.1
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 2.1e-103 379.8 301 58.5
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.8e-102 376.7 284 59.2
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 2.0e-101 373.2 257 67.3
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 5.7e-101 371.7 256 66.0
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 5.7e-101 371.7 301 57.1
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.3e-100 370.5 254 63.8
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 3.7e-100 369.0 253 62.1
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 3.7e-100 369.0 274 60.6
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 1.4e-99 367.1 250 63.6
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 1.8e-99 366.7 233 72.1
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 3.1e-99 365.9 286 58.7
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 5.3e-99 365.2 284 58.5
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 9.1e-99 364.4 285 57.9
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 9.1e-99 364.4 285 57.9
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 1.6e-98 363.6 286 58.0
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 2.0e-98 363.2 296 55.4
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 2.0e-98 363.2 280 57.5
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 2.0e-98 363.2 237 70.0
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 2.0e-98 363.2 263 59.3
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 2.7e-98 362.8 308 55.2
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 5.9e-98 361.7 284 57.4
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.0e-97 360.9 234 70.1
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-97 360.1 203 77.8
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 1.7e-97 360.1 254 66.1
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 1.1e-96 357.5 291 54.6
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.9e-96 356.7 234 68.8
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 3.2e-96 355.9 286 58.7
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 7.2e-96 354.8 287 55.4
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 1.6e-95 353.6 240 67.9
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 8.0e-95 351.3 267 60.7
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 1.2e-93 347.4 256 61.3
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 3.4e-93 345.9 301 55.8
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 1.7e-92 343.6 310 54.2
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 9.1e-91 337.8 260 58.8
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 9.1e-91 337.8 271 58.3
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 2.3e-89 333.2 259 57.5
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.9e-88 330.1 252 61.1
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 1.2e-87 327.4 297 53.5
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 1.2e-87 327.4 301 54.8
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 2.1e-87 326.6 288 55.6
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 8.9e-86 321.2 251 61.8
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 3.5e-82 309.3 249 56.2
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 4.5e-82 308.9 214 75.2
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 2.3e-81 306.6 326 48.5
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 3.4e-77 292.7 304 48.4
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 7.0e-75 285.0 251 53.8
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 7.8e-74 281.6 271 52.0
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 2.8e-71 273.1 263 51.3
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 1.2e-69 267.7 257 50.2
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 6.4e-60 235.3 221 51.1
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 2.3e-57 226.9 252 46.4
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 2.4e-54 216.9 132 69.7
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 3.1e-54 216.5 287 39.7
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 1.3e-52 211.1 255 41.2
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.6e-50 204.1 181 52.5
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 2.1e-47 193.7 106 78.3
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.1e-46 191.4 183 54.6
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 2.7e-42 176.8 246 38.6
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 1.5e-37 161.0 80 87.5
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 1.3e-36 157.9 81 79.0
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 2.9e-36 156.8 106 60.4
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 1.2e-29 134.8 118 56.8
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 4.2e-27 126.3 278 30.2
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 7.4e-24 115.5 73 71.2
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 7.4e-24 115.5 73 71.2
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 4.0e-22 109.8 83 53.0
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 1.3e-20 104.8 67 62.7
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-20 104.4 55 76.4
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-20 104.4 55 76.4
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 8.7e-17 92.0 48 79.2
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.8e-14 84.3 58 65.5
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.8e-14 84.3 58 65.5
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 2.5e-11 73.9 59 52.5
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.7e-10 70.5 54 61.1
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 7.9e-10 68.9 42 66.7
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 1.0e-09 68.6 65 44.6
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.1e-09 66.2 70 44.3
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 9.7e-08 62.0 32 81.2
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.4e-06 58.2 47 61.7
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 1.4e-06 58.2 46 50.0


User provided reference genes

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