Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.3e-182 642.9 317 100.0
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 8.8e-163 577.0 319 88.7
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 1.4e-160 569.7 317 89.6
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 1.7e-153 546.2 318 84.6
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 3.5e-127 458.8 317 72.2
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 3.4e-114 415.6 282 70.9
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 3.7e-113 412.1 324 67.6
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 3.2e-112 409.1 324 66.7
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 9.5e-109 397.5 317 64.4
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 1.3e-105 387.1 321 63.9
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 1.5e-101 373.6 314 59.9
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 1.5e-101 373.6 322 62.4
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 2.6e-98 362.8 256 66.4
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 2.6e-98 362.8 317 58.7
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 5.8e-98 361.7 320 58.8
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 1.7e-97 360.1 309 60.5
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 2.9e-97 359.4 321 57.9
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 6.4e-97 358.2 321 58.3
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 6.4e-97 358.2 315 59.0
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 8.4e-97 357.8 323 58.5
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 9.3e-96 354.4 307 59.9
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 1.2e-95 354.0 317 59.6
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 3.5e-95 352.4 321 57.0
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 3.5e-95 352.4 308 60.4
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 6.0e-95 351.7 323 55.4
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 7.8e-95 351.3 308 58.1
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 7.8e-95 351.3 276 59.8
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 1.0e-94 350.9 314 59.2
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 1.0e-94 350.9 276 62.3
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 1.0e-94 350.9 257 66.5
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 1.7e-94 350.1 320 57.2
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 2.3e-94 349.7 320 57.2
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 2.3e-94 349.7 303 56.4
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 3.0e-94 349.4 293 58.4
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 3.9e-94 349.0 341 54.0
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 3.9e-94 349.0 314 55.7
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 5.1e-94 348.6 268 62.7
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 6.6e-94 348.2 329 56.5
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 6.6e-94 348.2 294 57.1
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 8.7e-94 347.8 320 55.6
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 1.5e-93 347.1 320 55.0
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 1.9e-93 346.7 318 56.9
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 2.5e-93 346.3 322 56.5
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 5.6e-93 345.1 320 55.3
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 5.6e-93 345.1 299 57.5
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 2.8e-92 342.8 320 56.6
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 4.8e-92 342.0 320 56.9
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 6.2e-92 341.7 324 56.8
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 8.1e-92 341.3 317 56.8
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.1e-91 340.9 273 61.2
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 1.4e-91 340.5 284 60.2
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 3.1e-91 339.3 322 54.7
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 3.1e-91 339.3 324 54.9
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 4.0e-91 339.0 279 59.1
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 5.3e-91 338.6 318 56.0
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 6.9e-91 338.2 279 59.1
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 1.2e-90 337.4 257 61.5
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 1.2e-90 337.4 333 54.4
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.2e-90 337.4 273 61.2
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 1.5e-90 337.0 323 54.2
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 7.6e-90 334.7 303 56.4
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 9.9e-90 334.3 290 57.9
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 1.3e-89 334.0 321 55.5
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 1.3e-89 334.0 318 54.4
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 1.3e-89 334.0 318 54.4
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 1.3e-89 334.0 323 54.5
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 1.7e-89 333.6 291 57.4
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 2.9e-89 332.8 318 55.0
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 2.9e-89 332.8 324 54.9
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 2.9e-89 332.8 324 54.9
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 3.8e-89 332.4 291 57.4
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 3.8e-89 332.4 291 57.4
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 4.9e-89 332.0 318 54.1
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 6.4e-89 331.6 309 56.0
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 3.2e-88 329.3 261 60.2
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 7.1e-88 328.2 261 60.2
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 3.5e-87 325.9 290 56.9
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 6.0e-87 325.1 258 62.4
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 3.6e-84 315.8 323 53.6
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 4.8e-84 315.5 226 65.5
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 6.2e-84 315.1 323 53.9
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.8e-83 313.5 278 55.8
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 2.6e-82 309.7 315 51.1
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 7.6e-82 308.1 320 51.2
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 9.9e-82 307.8 313 50.5
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 2.9e-81 306.2 320 51.2
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 3.8e-81 305.8 323 52.3
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 1.9e-80 303.5 426 43.2
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 2.4e-80 303.1 321 51.7
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 1.6e-79 300.4 317 50.5
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 2.1e-79 300.1 286 55.9
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 3.5e-79 299.3 245 58.8
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.3e-78 297.4 247 58.3
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 3.0e-78 296.2 333 48.3
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.9e-77 293.5 273 56.0
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.1e-75 287.7 246 58.1
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 9.3e-72 274.6 384 42.4
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.6e-71 273.9 275 50.2
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 1.8e-70 270.4 257 50.2
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 1.9e-69 266.9 159 77.4
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 2.7e-63 246.5 314 44.9
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 1.6e-60 237.3 234 52.6
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 9.1e-59 231.5 261 47.1
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 5.0e-57 225.7 248 43.5
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.1e-55 220.3 251 45.0
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 2.0e-53 213.8 257 44.7
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 1.3e-49 201.1 247 39.7
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 4.4e-45 186.0 260 43.8
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.4e-43 181.0 130 62.3
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 1.5e-40 171.0 199 46.2
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 4.2e-40 169.5 171 55.6
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 7.2e-40 168.7 94 85.1
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 7.0e-35 152.1 106 67.0
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 1.1e-32 144.8 76 86.8
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 8.8e-30 135.2 74 81.1
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 4.4e-29 132.9 144 41.0
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 1.7e-25 120.9 75 74.7
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 2.3e-25 120.6 131 48.9
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 5.0e-25 119.4 160 49.4
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.1e-24 118.2 160 48.8
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 1.6e-23 114.4 159 46.5
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.4e-22 111.3 261 28.7
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 3.4e-21 106.7 136 41.9
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 6.3e-20 102.4 97 53.6
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 2.4e-19 100.5 159 46.5
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 2.7e-18 97.1 249 29.3
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 7.8e-18 95.5 88 45.5
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 2.1e-15 87.4 133 48.9
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 1.5e-13 81.3 184 31.0
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 6.4e-12 75.9 91 50.5
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 2.4e-11 73.9 244 27.5
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 9.2e-11 72.0 236 28.0
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.2e-10 71.6 136 37.5
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.6e-10 71.2 62 59.7
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.0e-10 70.9 62 58.1
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.5e-10 70.1 62 58.1
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 7.8e-10 68.9 62 58.1
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.5e-08 64.7 62 54.8
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.9e-08 64.3 51 58.8
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 3.3e-08 63.5 265 27.5
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 3.6e-07 60.1 233 26.2
MCO02G120 Micromonas commoda HOM05D006013 ORTHO05D007383 4.7e-07 59.7 244 24.6
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 6.8e-06 55.8 318 24.8
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 6.8e-06 55.8 262 24.8
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 8.9e-06 55.5 294 23.1


User provided reference genes

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