Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 0.0e+00 1149.8 624 100.0
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 7.7e-296 1020.0 621 87.9
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 8.0e-293 1010.0 615 87.3
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.8e-290 1001.5 619 86.4
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.8e-290 1001.5 619 86.4
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.6e-280 969.1 615 82.4
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.9e-278 962.2 614 83.1
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.6e-261 906.0 621 78.4
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 8.1e-261 903.7 613 79.1
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 3.1e-252 875.2 621 75.0
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.4e-249 866.3 618 75.2
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 7.8e-240 833.9 622 70.9
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 5.4e-233 811.2 621 70.4
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.0e-231 805.4 607 69.7
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.1e-230 803.5 646 67.3
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.3e-229 800.0 616 68.0
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 9.9e-227 790.4 622 67.8
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.7e-226 789.6 603 69.5
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 8.4e-226 787.3 603 69.2
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.9e-225 786.2 617 67.4
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 4.2e-225 785.0 610 68.5
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.1e-224 782.7 659 64.5
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.3e-223 780.0 622 67.0
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 6.7e-223 777.7 607 69.4
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.5e-222 775.8 563 71.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 5.6e-222 774.6 622 66.4
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 3.1e-220 768.8 615 66.7
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.2e-219 766.9 573 70.2
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.3e-218 763.5 614 67.6
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.9e-218 762.3 617 67.6
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 4.9e-218 761.5 591 67.9
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 5.5e-217 758.1 617 67.1
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.6e-216 756.5 604 65.2
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.5e-216 755.4 617 66.9
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.0e-215 753.8 617 65.5
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.8e-215 753.1 605 67.4
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-215 753.1 623 65.0
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 8.7e-215 750.7 625 66.2
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.5e-214 750.0 607 65.6
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.6e-213 746.5 624 64.4
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.8e-213 745.7 615 63.9
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 4.8e-213 745.0 611 65.3
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 4.8e-213 745.0 607 64.6
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.1e-212 741.9 594 67.8
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.9e-212 741.1 598 67.7
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 2.6e-211 739.2 602 65.4
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.0e-210 737.3 619 63.3
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.9e-210 735.7 615 63.1
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 6.5e-210 734.6 598 67.7
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 8.5e-210 734.2 617 63.0
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.7e-208 729.2 619 62.0
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 4.6e-208 728.4 615 62.9
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.8e-205 719.2 629 62.6
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.1e-204 717.2 608 63.8
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 5.3e-204 714.9 619 61.4
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.0e-203 713.0 597 65.8
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.9e-202 709.1 621 62.2
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.1e-201 707.2 644 59.2
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.1e-201 707.2 619 61.7
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 3.2e-201 705.7 621 61.4
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 4.7e-200 701.8 622 60.8
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.4e-199 700.3 606 62.2
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 6.7e-199 698.0 618 59.7
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.1e-198 697.2 620 61.3
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 9.7e-198 694.1 622 59.5
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 5.3e-196 688.3 619 59.0
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 3.5e-195 685.6 617 58.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 8.5e-194 681.0 550 63.6
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.5e-190 670.2 610 61.8
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 3.3e-190 669.1 625 58.1
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 1.3e-189 667.2 574 61.8
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 4.8e-189 665.2 616 58.1
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 8.2e-189 664.5 626 59.3
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 5.9e-187 658.3 611 59.4
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.2e-184 650.6 620 57.6
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.8e-183 646.7 619 56.7
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 2.7e-179 632.9 622 55.6
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 1.9e-177 626.7 624 56.1
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.6e-176 623.6 603 60.0
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.7e-176 622.9 619 55.3
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 2.7e-176 622.9 624 55.9
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 3.0e-175 619.4 619 54.9
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 5.4e-172 608.6 613 54.8
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.0e-171 606.7 619 53.8
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 7.7e-171 604.7 570 57.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 2.3e-170 603.2 619 53.6
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 2.8e-168 596.3 590 54.7
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 5.2e-167 592.0 532 60.7
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 8.3e-165 584.7 386 78.8
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 7.8e-155 551.6 435 68.5
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.0e-154 551.2 448 66.3
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 2.1e-152 543.5 570 52.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 2.3e-146 523.5 445 64.0
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.9e-146 522.7 494 58.7
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 8.1e-144 515.0 510 56.1
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.2e-131 474.6 594 48.5
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 3.6e-128 463.0 598 44.3
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 6.2e-128 462.2 598 45.3
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.4e-127 460.3 361 69.0
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 5.8e-126 455.7 592 44.6
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.4e-125 451.8 389 64.8
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.3e-121 439.9 388 62.9
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-120 437.2 358 64.0
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 3.1e-111 406.8 340 62.4
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 2.2e-101 374.0 225 85.8
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 6.5e-101 372.5 532 43.8
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-86 323.9 513 41.1
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 2.6e-78 297.4 250 64.4
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.1e-71 273.9 292 52.4
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-65 255.4 230 57.8
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.4e-65 253.8 207 63.3
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 9.8e-65 252.3 375 42.4
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.1e-63 247.3 220 59.1
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 5.9e-62 243.0 214 63.1
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 7.7e-62 242.7 172 71.5
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.5e-57 226.1 226 55.3
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.0e-53 215.7 176 64.2
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.1e-51 208.0 161 66.5
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.8e-51 207.6 161 66.5
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.0e-45 189.1 171 53.8
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 6.8e-42 176.4 196 52.6
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.4e-39 166.8 173 55.5
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 3.5e-38 164.1 171 59.6
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.6e-35 154.1 147 54.4
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 6.8e-34 149.8 109 68.8
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 2.7e-30 137.9 89 80.9
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.3e-28 130.6 93 68.8
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-24 118.6 97 59.8
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-24 117.9 80 73.8
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 4.1e-23 114.0 119 56.3
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.4e-23 113.6 127 51.2
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.8e-22 109.8 80 67.5
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 2.8e-19 101.3 84 63.1
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 3.1e-18 97.8 58 77.6
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 5.1e-13 80.5 92 44.6
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.5e-12 79.0 333 25.2
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.1e-10 72.8 46 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 4.0e-10 70.9 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 4.0e-10 70.9 46 65.2


User provided reference genes

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