Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 0.0e+00 1327.0 669 100.0
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.3e-301 1039.3 671 79.4
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.3e-301 1039.3 671 79.4
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 3.8e-301 1037.7 670 78.8
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.3e-293 1012.7 667 77.7
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 5.8e-281 970.7 675 73.3
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.7e-277 959.1 675 72.6
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 5.6e-276 954.1 680 74.4
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 8.9e-274 946.8 675 71.7
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 9.8e-273 943.3 674 72.0
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.2e-259 899.8 683 68.7
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 2.9e-256 888.6 678 68.1
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 3.6e-251 871.7 659 68.4
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.9e-228 796.2 682 61.6
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 2.5e-228 795.8 670 61.2
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.1e-226 790.4 681 60.5
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 1.2e-225 786.9 692 60.7
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.5e-225 786.6 672 60.4
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.2e-224 782.7 683 59.7
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 2.2e-224 782.7 673 60.3
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 9.3e-223 777.3 670 60.6
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 1.3e-221 773.5 671 60.4
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 8.7e-221 770.8 676 59.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.9e-220 769.6 671 59.5
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 7.4e-220 767.7 664 60.1
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.6e-219 766.5 677 59.5
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.3e-216 756.9 701 57.8
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.2e-216 756.1 693 57.9
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.9e-216 755.7 684 58.6
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 2.5e-215 752.7 685 58.0
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.1e-214 749.6 678 58.8
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 2.3e-213 746.1 655 59.8
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.6e-212 742.7 687 56.3
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.3e-211 740.3 680 58.1
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.2e-211 739.6 673 56.8
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 2.8e-211 739.2 674 57.3
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 9.1e-210 734.2 674 56.1
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 2.6e-209 732.6 668 57.2
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 7.7e-209 731.1 668 56.6
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.0e-208 730.7 653 58.8
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.0e-208 730.7 672 56.8
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.7e-208 729.9 670 56.3
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 4.2e-207 725.3 677 56.4
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 4.2e-207 725.3 671 56.2
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 4.2e-207 725.3 683 55.2
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 4.2e-207 725.3 674 55.9
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 5.5e-207 724.9 681 55.9
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 9.4e-207 724.2 679 55.8
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.7e-206 722.6 656 58.7
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 3.9e-205 718.8 671 55.7
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 5.2e-205 718.4 672 56.4
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 5.2e-205 718.4 654 58.1
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 6.7e-205 718.0 668 56.4
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 7.4e-204 714.5 682 55.1
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.1e-202 710.7 689 55.3
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.1e-202 709.1 690 55.1
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 5.3e-202 708.4 685 55.6
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 7.0e-202 708.0 681 54.6
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 7.0e-202 708.0 681 55.5
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 7.0e-202 708.0 691 55.4
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 1.6e-201 706.8 679 56.7
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.0e-200 704.1 674 56.5
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 6.5e-200 701.4 686 55.8
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 6.5e-200 701.4 689 55.2
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.5e-199 700.3 679 55.2
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 9.4e-199 697.6 676 54.9
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.6e-198 696.8 688 55.8
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 2.1e-198 696.4 684 55.3
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.5e-196 690.3 680 55.1
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.5e-196 690.3 681 54.2
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.5e-196 690.3 688 55.2
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 6.3e-195 684.9 468 70.5
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 6.3e-195 684.9 678 54.4
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 8.2e-195 684.5 684 55.7
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.8e-194 683.3 690 55.2
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 5.3e-194 681.8 642 57.3
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 9.1e-194 681.0 682 54.3
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 4.5e-193 678.7 640 55.2
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.9e-191 673.3 693 52.5
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 3.6e-190 669.1 620 56.6
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 2.1e-182 643.3 668 53.1
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.8e-181 640.2 680 50.1
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.2e-180 637.5 666 52.0
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 5.0e-176 622.1 665 51.1
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 9.5e-175 617.8 673 50.4
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 4.7e-166 589.0 602 54.0
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.4e-156 555.8 615 48.8
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 9.9e-156 554.7 683 47.6
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.9e-155 553.1 420 65.7
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.4e-141 507.7 521 54.1
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 3.9e-136 489.6 688 44.9
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 6.6e-136 488.8 602 48.2
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 4.8e-134 482.6 541 49.7
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 1.5e-132 477.6 655 41.4
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.3e-128 464.5 641 42.7
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.1e-121 440.7 643 40.9
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.3e-120 438.0 253 80.6
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.7e-115 421.0 497 48.3
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 2.2e-115 420.6 627 42.9
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 3.3e-111 406.8 386 52.3
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.8e-109 401.0 302 68.9
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.5e-98 362.8 587 41.2
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.4e-93 348.2 345 52.8
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 8.5e-91 339.0 178 88.2
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 5.5e-90 336.3 657 36.8
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.0e-77 292.7 197 70.1
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.9e-74 284.6 483 38.5
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 4.4e-63 246.9 387 40.6
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 6.3e-62 243.0 459 36.4
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.8e-55 219.9 170 64.7
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.7e-52 211.1 104 89.4
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 1.7e-51 208.4 106 85.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.4e-40 172.2 517 31.7
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 8.6e-35 152.9 284 36.6
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.3e-34 151.0 184 45.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 5.6e-34 150.2 200 40.5
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 9.5e-34 149.4 137 56.2
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.7e-27 128.6 154 45.5
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.5e-26 125.6 238 35.7
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.6e-25 122.1 58 87.9
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 3.6e-25 120.9 68 85.3
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 6.2e-25 120.2 83 69.9
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 7.6e-23 113.2 83 65.1
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.7e-22 112.1 100 54.0
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 3.3e-18 97.8 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 2.0e-15 88.6 79 57.0
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 3.4e-15 87.8 79 57.0
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 4.5e-15 87.4 79 55.7
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.7e-14 85.5 79 55.7
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.2e-14 85.1 79 54.4
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.4e-13 82.4 79 54.4
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 2.1e-12 78.6 65 58.5
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 4.6e-12 77.4 69 56.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 3.7e-09 67.8 185 31.9
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 2.4e-08 65.1 75 50.7


User provided reference genes

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