Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3860 Trifolium pratense HOM05D008175 ORTHO05D010403 1.5e-240 835.9 439 100.0
TPR.G21834 Trifolium pratense HOM05D008175 ORTHO05D010403 6.1e-98 362.1 242 80.6
TPR.G20555 Trifolium pratense HOM05D008175 ORTHO05D010403 4.9e-87 325.9 240 73.3
Medtr7g092650 Medicago truncatula HOM05D008175 ORTHO05D010403 1.3e-79 301.2 288 58.7
Medtr6g013240 Medicago truncatula HOM05D008175 ORTHO05D010403 6.4e-79 298.9 289 58.1
Medtr6g013380 Medicago truncatula HOM05D008175 ORTHO05D010403 6.4e-79 298.9 289 58.1
Medtr7g095350 Medicago truncatula HOM05D008175 ORTHO05D010403 5.4e-78 295.8 288 58.3
TPR.G24323 Trifolium pratense HOM05D008175 ORTHO05D010403 2.3e-76 290.4 285 60.0
Medtr7g105510 Medicago truncatula HOM05D008175 ORTHO05D010403 3.2e-70 270.0 273 57.1
Medtr7g089620 Medicago truncatula HOM05D008175 ORTHO05D010403 9.3e-70 268.5 300 54.3
Medtr3g009910 Medicago truncatula HOM05D008175 ORTHO05D010403 1.6e-69 267.7 285 53.0
Medtr7g095560 Medicago truncatula HOM05D008175 ORTHO05D010403 5.1e-68 262.7 296 52.4
Medtr7g087840 Medicago truncatula HOM05D008175 ORTHO05D010403 7.3e-67 258.8 287 54.4
Medtr7g089610 Medicago truncatula HOM05D008175 ORTHO05D010403 2.4e-65 253.8 293 53.6
Psat3g047200 Pisum sativum HOM05D008175 ORTHO05D010403 9.3e-62 241.9 291 50.9
Medtr7g087040 Medicago truncatula HOM05D008175 ORTHO05D010403 9.6e-59 231.9 287 49.8
Medtr7g089570 Medicago truncatula HOM05D008175 ORTHO05D010403 8.4e-55 218.8 300 47.3
Psat0s1930g0040 Pisum sativum HOM05D008175 ORTHO05D010403 2.3e-52 210.7 245 50.6
Medtr6g071510 Medicago truncatula HOM05D008175 ORTHO05D010403 8.7e-52 208.8 281 48.8
Medtr6g471290 Medicago truncatula HOM05D008175 ORTHO05D010403 8.7e-52 208.8 281 48.8
Medtr2g032920 Medicago truncatula HOM05D008175 ORTHO05D010403 3.3e-51 206.8 278 48.9
Psat1g038520 Pisum sativum HOM05D008175 ORTHO05D010403 3.3e-51 206.8 253 49.0
Psat0s1584g0040 Pisum sativum HOM05D008175 ORTHO05D010403 5.6e-51 206.1 293 47.4
Medtr7g095310 Medicago truncatula HOM05D008175 ORTHO05D010403 1.8e-49 201.1 229 54.6
TPR.G4066 Trifolium pratense HOM05D008175 ORTHO05D010403 1.3e-47 194.9 229 49.8
Psat7g057400 Pisum sativum HOM05D008175 ORTHO05D010403 7.9e-45 185.7 239 48.1
TPR.G3814 Trifolium pratense HOM05D008175 ORTHO05D010403 6.7e-44 182.6 105 87.6
Medtr2g064400 Medicago truncatula HOM05D008175 ORTHO05D010403 1.3e-42 178.3 233 47.6
Psat5g038520 Pisum sativum HOM05D008175 ORTHO05D010403 1.8e-41 174.5 240 45.4
Medtr7g095340 Medicago truncatula HOM05D008175 ORTHO05D010403 2.8e-34 150.6 141 61.0
Medtr0176s0050 Medicago truncatula HOM05D008175 ORTHO05D010403 1.4e-33 148.3 183 50.3
Medtr7g095390 Medicago truncatula HOM05D008175 ORTHO05D010403 3.2e-30 137.1 129 60.5
TPR.G19102 Trifolium pratense HOM05D008175 ORTHO05D010403 3.9e-20 103.6 80 63.8
TPR.G4771 Trifolium pratense HOM05D009500 ORTHO05D000368 4.4e-19 100.1 228 32.9
Psat0s2128g0040 Pisum sativum HOM05D008175 ORTHO05D010403 3.1e-17 94.0 107 48.6
Medtr7g105980 Medicago truncatula HOM05D008175 ORTHO05D010403 5.3e-17 93.2 214 33.2
TPR.G4705 Trifolium pratense HOM05D008175 ORTHO05D000368 1.2e-16 92.0 209 32.1
Ca_26228_v3 Cicer arietinum L. HOM05D008175 ORTHO05D010403 1.6e-16 91.7 172 38.4
Ca_01871_v3 Cicer arietinum L. HOM05D008175 ORTHO05D010403 2.6e-16 90.9 98 55.1
Ca_25084_v3 Cicer arietinum L. HOM05D009500 ORTHO05D010403 3.5e-16 90.5 265 31.3
Psat3g069760 Pisum sativum HOM05D006381 ORTHO05D008523 3.5e-16 90.5 48 89.6
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 7.7e-16 89.4 59 76.3
Medtr7g092820 Medicago truncatula HOM05D006381 ORTHO05D008523 1.3e-15 88.6 48 85.4
Ca_08505_v3 Cicer arietinum L. HOM05D006381 ORTHO05D008523 2.2e-15 87.8 48 81.2
TPR.G4702 Trifolium pratense HOM05D009500 ORTHO05D000368 2.2e-15 87.8 254 31.1
TPR.G6942 Trifolium pratense HOM05D009500 ORTHO05D000368 2.2e-15 87.8 233 33.5
MSTRG.6465 Avicennia marina HOM05D006381 ORTHO05D008523 5.0e-15 86.7 46 84.8
Haze_19961 Corylus avellana HOM05D006381 ORTHO05D008523 8.5e-15 85.9 48 79.2
QL07p023132 Quercus lobata HOM05D006381 ORTHO05D008523 8.5e-15 85.9 46 84.8
GSVIVG01033526001 Vitis vinifera HOM05D006381 ORTHO05D008523 8.5e-15 85.9 46 84.8
TPR.G4783 Trifolium pratense HOM05D009500 ORTHO05D000368 1.1e-14 85.5 168 33.9
arahy.Tifrunner.gnm1.ann1.427FHC Arachis hypogaea HOM05D006381 ORTHO05D008523 2.5e-14 84.3 46 80.4
Ciclev10012632m.g Citrus clementina HOM05D006381 ORTHO05D008523 2.5e-14 84.3 46 80.4
Hund19189 Selenicereus undatus HOM05D006381 ORTHO05D008523 2.5e-14 84.3 46 80.4
CSS0049124 Camellia sinensis var. sinensis HOM05D006381 ORTHO05D008523 3.2e-14 84.0 46 82.6
MELO3C009019.2 Cucumis melo HOM05D006381 ORTHO05D008523 3.2e-14 84.0 46 80.4
Oeu033185.1 Olea europaea HOM05D006381 ORTHO05D008523 3.2e-14 84.0 46 80.4
SGA_v2.0_scaffold105G30477 Striga asiatica HOM05D006381 ORTHO05D005344 3.2e-14 84.0 46 80.4
CiPaw.09G032200 Carya illinoinensis HOM05D006381 ORTHO05D008523 4.2e-14 83.6 46 78.3
CsaV3_4G031300 Cucumis sativus L. HOM05D006381 ORTHO05D008523 4.2e-14 83.6 46 80.4
Dinv14276 Davidia involucrata HOM05D006381 ORTHO05D008523 5.5e-14 83.2 46 80.4
Gohir.A01G191900 Gossypium hirsutum HOM05D006381 ORTHO05D008523 5.5e-14 83.2 46 80.4
Gohir.D01G178100 Gossypium hirsutum HOM05D006381 ORTHO05D008523 5.5e-14 83.2 46 80.4
Gorai.002G225000 Gossypium raimondii HOM05D006381 ORTHO05D008523 5.5e-14 83.2 46 80.4
Lalb_Chr18g0047731 Lupinus albus HOM05D006381 ORTHO05D008523 5.5e-14 83.2 48 77.1
TWI74G0881 Tripterygium wilfordii HOM05D006381 ORTHO05D008523 5.5e-14 83.2 46 82.6
FvH4_6g22700 Fragaria vesca HOM05D006381 ORTHO05D008523 7.2e-14 82.8 46 80.4
FAN02G4230 Fragaria x ananassa HOM05D006381 ORTHO05D008523 7.2e-14 82.8 46 80.4
FAN05G1475 Fragaria x ananassa HOM05D006381 ORTHO05D008523 7.2e-14 82.8 46 80.4
FAN09G4702 Fragaria x ananassa HOM05D006381 ORTHO05D008523 7.2e-14 82.8 46 80.4
FAN14G0786 Fragaria x ananassa HOM05D006381 ORTHO05D008523 7.2e-14 82.8 46 80.4
EL10Ac3g06950 Beta vulgaris HOM05D006381 ORTHO05D008523 9.4e-14 82.4 46 76.1
Lju124A30T11 Lonicera japonica HOM05D006381 ORTHO05D008523 9.4e-14 82.4 46 78.3
Manes.08G046500 Manihot esculenta HOM05D006381 ORTHO05D008523 9.4e-14 82.4 46 78.3
ClCG04G000940 Citrullus lanatus HOM05D006381 ORTHO05D008523 1.2e-13 82.0 46 78.3
Glyma.19G145800 Glycine max HOM05D006381 ORTHO05D008523 1.2e-13 82.0 46 78.3
VMungo1383G2147 Vigna mungo HOM05D006381 ORTHO05D008523 1.2e-13 82.0 46 76.1
Cc00_g14590 Coffea canephora HOM05D006381 ORTHO05D008523 1.6e-13 81.6 46 82.6
FAN14G1353 Fragaria x ananassa HOM05D006381 ORTHO05D008523 1.6e-13 81.6 46 78.3
SalBow6G4397 Salvia bowleyana HOM05D006381 ORTHO05D008523 1.6e-13 81.6 46 80.4
arahy.Tifrunner.gnm1.ann1.7X1X2Z Arachis hypogaea HOM05D006381 ORTHO05D008523 2.1e-13 81.3 46 76.1
Medtr7g116580 Medicago truncatula HOM05D009500 ORTHO05D000368 2.1e-13 81.3 193 30.1
Prupe.7G073600 Prunus persica HOM05D006381 ORTHO05D008523 2.1e-13 81.3 46 76.1
PGR142G4202 Punica granatum HOM05D006381 ORTHO05D008523 2.1e-13 81.3 46 78.3
Solyc03g053110.3 Solanum lycopersicum HOM05D006381 ORTHO05D008523 2.1e-13 81.3 46 76.1
Sopen03g011700 Solanum pennellii HOM05D006381 ORTHO05D008523 2.1e-13 81.3 46 76.1
SGA_v2.0_scaffold21G09572 Striga asiatica HOM05D000036 ORTHO05D000095 2.1e-13 81.3 44 81.8
Thecc.05G168200 Theobroma cacao HOM05D006381 ORTHO05D008523 2.1e-13 81.3 46 78.3
TAR633G2259 Trochodendron aralioides HOM05D006381 ORTHO05D008523 2.1e-13 81.3 48 72.9
CAN.G316.6 Capsicum annuum HOM05D006381 ORTHO05D008523 2.7e-13 80.9 46 78.3
AUR62024330 Chenopodium quinoa HOM05D006381 ORTHO05D008523 2.7e-13 80.9 46 73.9
FAN06G5009 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.7e-13 80.9 225 32.4
Glyma.03G142800 Glycine max HOM05D006381 ORTHO05D008523 2.7e-13 80.9 46 76.1
RcHm_v2.0_Chr3g0480311 Rosa chinensis HOM05D006381 ORTHO05D008523 2.7e-13 80.9 46 76.1
PGSC0003DMG400011846 Solanum tuberosum HOM05D006381 ORTHO05D008523 2.7e-13 80.9 46 76.1
Ah.04g152280 Amaranthus hybridus HOM05D006381 ORTHO05D008523 3.6e-13 80.5 46 76.1
DCAR_019795 Daucus carota HOM05D006381 ORTHO05D008523 3.6e-13 80.5 46 73.9
Eucgr.K01824 Eucalyptus grandis HOM05D006381 ORTHO05D008523 3.6e-13 80.5 46 73.9
Lj1g0008226 Lotus japonicus HOM05D006381 ORTHO05D008523 3.6e-13 80.5 46 73.9
Phvul.001G140700 Phaseolus vulgaris HOM05D006381 ORTHO05D008523 3.6e-13 80.5 46 73.9
AUR62012069 Chenopodium quinoa HOM05D006381 ORTHO05D008523 4.7e-13 80.1 46 71.7
COL.COLO4_36132 Corchorus olitorius HOM05D006381 ORTHO05D008523 6.1e-13 79.7 46 73.9
Duzib128G0127 Durio zibethinus HOM05D006381 ORTHO05D008523 6.1e-13 79.7 46 78.3
Aa31LG1G24050 Aethionema arabicum HOM05D006381 ORTHO05D008523 8.0e-13 79.3 46 73.9
CiPaw.10G028100 Carya illinoinensis HOM05D006381 ORTHO05D008523 8.0e-13 79.3 46 80.4
HanXRQChr10g0295701 Helianthus annuus HOM05D006381 ORTHO05D008523 8.0e-13 79.3 46 73.9
Lsat_1_v5_gn_9_27981 Lactuca sativa HOM05D006381 ORTHO05D008523 8.0e-13 79.3 48 68.8
THA.LOC104802431 Tarenaya hassleriana HOM05D006381 ORTHO05D008523 8.0e-13 79.3 46 73.9
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 8.0e-13 79.3 255 26.7
Actinidia09382 Actinidia chinensis HOM05D006381 ORTHO05D008523 1.4e-12 78.6 46 73.9
MD12G1061100 Malus domestica HOM05D006381 ORTHO05D008523 1.4e-12 78.6 46 71.7
MD14G1060800 Malus domestica HOM05D006381 ORTHO05D008523 1.4e-12 78.6 46 71.7
Medtr7g114090 Medicago truncatula HOM05D009500 ORTHO05D000368 1.4e-12 78.6 163 33.1
PSO541G3448 Papaver somniferum HOM05D006381 ORTHO05D008523 1.4e-12 78.6 46 76.1
Medtr5g024120 Medicago truncatula HOM05D008175 ORTHO05D010403 1.8e-12 78.2 228 33.8
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.3e-12 77.8 46 76.1
Potri.006G059200 Populus trichocarpa HOM05D006381 ORTHO05D008523 2.3e-12 77.8 46 78.3
Thhalv10017186m.g Eutrema salsugineum HOM05D006381 ORTHO05D008523 3.0e-12 77.4 46 69.6
Nn2g15584 Nelumbo nucifera HOM05D006381 ORTHO05D008523 3.0e-12 77.4 46 76.1
Sed0015308 Sechium edule HOM05D006381 ORTHO05D008523 3.0e-12 77.4 46 73.9
PSO675G4699 Papaver somniferum HOM05D006381 ORTHO05D008523 4.0e-12 77.0 46 76.1
MBI04_g27128_MAGBIO Magnolia biondii HOM05D006381 ORTHO05D008523 6.7e-12 76.3 46 73.9
Rhsim03G0009200 Rhododendron simsii HOM05D006381 ORTHO05D008523 6.7e-12 76.3 46 71.7
Aqoxy2G00059 Aquilegia oxysepala HOM05D006381 ORTHO05D008523 8.8e-12 75.9 46 73.9
Sc13g0002120 Simmondsia chinensis HOM05D006381 ORTHO05D008523 8.8e-12 75.9 46 71.7
ECA247G3115 Erigeron canadensis HOM05D006381 ORTHO05D008523 1.1e-11 75.5 46 67.4
Zm00001eb308430 Zea mays HOM05D006381 ORTHO05D008523 1.1e-11 75.5 46 69.6
BcaB06g29230 Brassica carinata HOM05D006381 ORTHO05D008523 1.5e-11 75.1 46 69.6
BcaC02g07256 Brassica carinata HOM05D006381 ORTHO05D008523 1.5e-11 75.1 46 69.6
BolC4t28456H Brassica oleracea HOM05D006381 ORTHO05D008523 1.5e-11 75.1 46 69.6
Migut.J01817 Erythranthe guttata HOM05D006381 ORTHO05D008523 1.5e-11 75.1 48 62.5
AL4G40580 Arabidopsis lyrata HOM05D006381 ORTHO05D008523 2.0e-11 74.7 46 69.6
CARHR137260 Cardamine hirsuta HOM05D006381 ORTHO05D008523 2.0e-11 74.7 46 69.6
CDE07G0110 Ceratophyllum demersum HOM05D006381 ORTHO05D008523 2.0e-11 74.7 46 71.7
Sabra06G0042600 Salix brachista HOM05D006381 ORTHO05D008523 2.0e-11 74.7 46 76.1
Atru.BG.211.p Acer truncatum HOM05D006381 ORTHO05D008523 2.6e-11 74.3 46 71.7
FAN09G2824 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.6e-11 74.3 231 29.9
Sp4g24400 Schrenkiella parvula HOM05D006381 ORTHO05D008523 2.6e-11 74.3 46 67.4
vmacro07936 Vaccinium macrocarpon HOM05D006381 ORTHO05D008523 2.6e-11 74.3 46 69.6
ATR0800G100 Amborella trichopoda HOM05D006381 ORTHO05D008523 3.3e-11 73.9 48 66.7
AT2G42220 Arabidopsis thaliana HOM05D006381 ORTHO05D008523 3.3e-11 73.9 46 67.4
A04p32060 Brassica napus HOM05D006381 ORTHO05D008523 3.3e-11 73.9 46 69.6
C04p69580 Brassica napus HOM05D006381 ORTHO05D008523 3.3e-11 73.9 46 67.4
BraA04t18663Z Brassica rapa HOM05D006381 ORTHO05D008523 3.3e-11 73.9 46 69.6
CANSAT64G2218 Cannabis sativa HOM05D006381 ORTHO05D008523 4.4e-11 73.6 46 69.6
TAR633G1895 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.4e-11 73.6 227 26.0
Carub.0004s2456 Capsella rubella HOM05D006381 ORTHO05D008523 5.7e-11 73.2 46 67.4
Medtr7g116250 Medicago truncatula HOM05D008175 ORTHO05D000368 5.7e-11 73.2 209 33.0
MBI16_g01187_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 1.3e-10 72.0 192 28.1
Os09g0279400 Oryza sativa ssp. japonica HOM05D006381 ORTHO05D008523 4.8e-10 70.1 46 65.2
HPP92_003001 Vanilla planifolia HOM05D006381 ORTHO05D008523 6.3e-10 69.7 46 63.0
Psat4g068680 Pisum sativum HOM05D008175 ORTHO05D010403 8.2e-10 69.3 141 41.1
Medtr7g111110 Medicago truncatula HOM05D008175 ORTHO05D010403 2.4e-09 67.8 48 66.7
Medtr6g471300 Medicago truncatula HOM05D008175 ORTHO05D010403 3.1e-09 67.4 108 41.7
GSVIVG01017697001 Vitis vinifera HOM05D000576 ORTHO05D000368 5.3e-09 66.6 200 30.5
TPR.G6989 Trifolium pratense HOM05D009500 ORTHO05D000368 9.1e-09 65.9 218 28.9
Mapoly0036s0007 Marchantia polymorpha HOM05D006381 ORTHO05D008523 2.7e-08 64.3 47 63.8
MBI02_g05998_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 4.5e-08 63.5 191 24.6
SEGI_13099 Sequoiadendron giganteum HOM05D006381 ORTHO05D008523 4.5e-08 63.5 46 58.7
Psat3g003680 Pisum sativum HOM05D009500 ORTHO05D000368 1.0e-07 62.4 247 27.5
FvH4_7g27481 Fragaria vesca HOM05D008847 ORTHO05D000368 2.2e-07 61.2 129 33.3
SEGI_24484 Sequoiadendron giganteum HOM05D006381 ORTHO05D008523 2.2e-07 61.2 45 57.8
SMO140G0099 Selaginella moellendorffii HOM05D006381 ORTHO05D008523 2.9e-07 60.8 54 51.9
ATR0681G283 Amborella trichopoda HOM05D000312 ORTHO05D000221 5.0e-07 60.1 105 39.0
FAN06G2140 Fragaria x ananassa HOM05D008847 ORTHO05D000368 6.5e-07 59.7 230 26.1
FAN14G2376 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.5e-07 59.7 112 39.3
Lj2A371T35 Lonicera japonica HOM05D006381 ORTHO05D008523 1.5e-06 58.5 33 72.7
TWI63G0466 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 1.5e-06 58.5 141 29.1
Haze_05695 Corylus avellana HOM05D000576 ORTHO05D000368 1.9e-06 58.2 229 26.2
Rhsim13G0226200 Rhododendron simsii HOM05D000576 ORTHO05D000368 1.9e-06 58.2 267 26.6
AagrBONN_evm.TU.Sc2ySwM_344.4001 Anthoceros agrestis HOM05D006381 ORTHO05D008523 2.5e-06 57.8 44 56.8
FvH4_6g44771 Fragaria vesca HOM05D006186 ORTHO05D009138 2.5e-06 57.8 117 35.9
TAR365G0551 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.5e-06 57.8 192 27.6
Atru.chr4.3172 Acer truncatum HOM05D000576 ORTHO05D000368 3.2e-06 57.4 192 27.6
FAN14G3517 Fragaria x ananassa HOM05D006186 ORTHO05D009138 4.2e-06 57.0 117 35.9
TAR633G0708 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.2e-06 57.0 180 25.6
CAN.G411.94 Capsicum annuum HOM05D009846 ORTHO05D000368 5.5e-06 56.6 219 27.4
FAN03G0347 Fragaria x ananassa HOM05D008847 ORTHO05D000368 5.5e-06 56.6 232 25.9
Atru.chr4.3173 Acer truncatum HOM05D000576 ORTHO05D000368 9.4e-06 55.8 192 27.6
CAN.G337.7 Capsicum annuum HOM05D009846 ORTHO05D000368 9.4e-06 55.8 218 27.1
CAN.G337.8 Capsicum annuum HOM05D009846 ORTHO05D000368 9.4e-06 55.8 218 27.1


User provided reference genes

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