Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G386 Trifolium pratense HOM05D003982 ORTHO05D004831 8.2e-38 159.8 78 100.0
Medtr2g096300 Medicago truncatula HOM05D003982 ORTHO05D004831 4.4e-31 137.5 72 94.4
Psat5g282440 Pisum sativum HOM05D003982 ORTHO05D004831 1.2e-28 129.4 81 82.7
Lalb_Chr14g0374961 Lupinus albus HOM05D003982 ORTHO05D004831 2.7e-28 128.3 72 88.9
Lalb_Chr22g0350001 Lupinus albus HOM05D003982 ORTHO05D004831 4.5e-28 127.5 72 87.5
Phvul.L002043 Phaseolus vulgaris HOM05D003982 ORTHO05D004831 8.5e-27 123.2 72 84.7
Glyma.13G332500 Glycine max HOM05D003982 ORTHO05D004831 1.9e-26 122.1 72 83.3
Lj3g0005665 Lotus japonicus HOM05D003982 ORTHO05D004831 1.9e-26 122.1 74 85.1
Glyma.15G041700 Glycine max HOM05D003982 ORTHO05D004831 7.2e-26 120.2 72 81.9
Glyma.12G066800 Glycine max HOM05D003982 ORTHO05D004831 3.6e-25 117.9 72 79.2
arahy.Tifrunner.gnm1.ann1.95NMQN Arachis hypogaea HOM05D003982 ORTHO05D004831 6.1e-25 117.1 71 84.5
arahy.Tifrunner.gnm1.ann1.AUFX4T Arachis hypogaea HOM05D003982 ORTHO05D004831 6.1e-25 117.1 71 84.5
VMungo1080G1641 Vigna mungo HOM05D003982 ORTHO05D004831 8.0e-25 116.7 72 83.3
Phvul.011G067700 Phaseolus vulgaris HOM05D003982 ORTHO05D004831 2.0e-23 112.1 73 76.7
Lj3g0020703 Lotus japonicus HOM05D003982 ORTHO05D004831 3.4e-23 111.3 72 76.4
Medtr4g063040 Medicago truncatula HOM05D003982 ORTHO05D004831 3.7e-22 107.8 72 72.2
Glyma.11G143500 Glycine max HOM05D003982 ORTHO05D004831 6.3e-22 107.1 68 77.9
CANSAT54G2978 Cannabis sativa HOM05D003982 ORTHO05D004831 1.1e-21 106.3 79 72.2
TWI31G0176 Tripterygium wilfordii HOM05D003982 ORTHO05D004831 2.4e-21 105.1 55 90.9
GSVIVG01025043001 Vitis vinifera HOM05D003982 ORTHO05D004831 4.1e-21 104.4 79 70.9
Actinidia03777 Actinidia chinensis HOM05D003982 ORTHO05D004831 1.2e-20 102.8 71 74.6
Atru.chr3.3810 Acer truncatum HOM05D003982 ORTHO05D004831 1.6e-20 102.4 56 89.3
ClCG02G020490 Citrullus lanatus HOM05D003982 ORTHO05D004831 1.6e-20 102.4 56 85.7
MELO3C013673.2 Cucumis melo HOM05D003982 ORTHO05D004831 2.0e-20 102.1 57 84.2
CsaV3_6G022130 Cucumis sativus L. HOM05D003982 ORTHO05D004831 2.0e-20 102.1 57 84.2
Gohir.A03G038100 Gossypium hirsutum HOM05D003982 ORTHO05D004831 2.0e-20 102.1 74 68.9
Gohir.D03G130300 Gossypium hirsutum HOM05D003982 ORTHO05D004831 2.0e-20 102.1 74 68.9
Gorai.003G137000 Gossypium raimondii HOM05D003982 ORTHO05D004831 2.0e-20 102.1 74 68.9
TWI79G0386 Tripterygium wilfordii HOM05D003982 ORTHO05D004831 2.0e-20 102.1 56 87.5
Rhsim01G0224300 Rhododendron simsii HOM05D003982 ORTHO05D004831 2.7e-20 101.7 71 74.6
Duzib168G2133 Durio zibethinus HOM05D003982 ORTHO05D004831 3.5e-20 101.3 73 72.6
Cpa.g.sc252.18 Carica papaya HOM05D003982 ORTHO05D004831 7.7e-20 100.1 78 65.4
CiPaw.14G072900 Carya illinoinensis HOM05D003982 ORTHO05D004831 7.7e-20 100.1 55 89.1
Thecc.09G328700 Theobroma cacao HOM05D003982 ORTHO05D004831 7.7e-20 100.1 78 70.5
AT3G46180 Arabidopsis thaliana HOM05D003982 ORTHO05D004831 1.3e-19 99.4 71 69.0
QL01p033527 Quercus lobata HOM05D003982 ORTHO05D004831 1.3e-19 99.4 77 66.2
Haze_24023 Corylus avellana HOM05D003982 ORTHO05D004831 1.7e-19 99.0 72 70.8
RcHm_v2.0_Chr5g0062701 Rosa chinensis HOM05D003982 ORTHO05D004831 1.7e-19 99.0 73 69.9
MBI05_g07846_MAGBIO Magnolia biondii HOM05D003982 ORTHO05D004831 2.3e-19 98.6 54 87.0
Manes.11G135100 Manihot esculenta HOM05D003982 ORTHO05D004831 2.3e-19 98.6 57 84.2
Sc21g0005410 Simmondsia chinensis HOM05D003982 ORTHO05D004831 2.3e-19 98.6 78 69.2
THA.LOC104799459 Tarenaya hassleriana HOM05D003982 ORTHO05D004831 2.3e-19 98.6 78 67.9
vmacro14502 Vaccinium macrocarpon HOM05D003982 ORTHO05D004831 2.3e-19 98.6 78 65.4
Nn6g34882 Nelumbo nucifera HOM05D003982 ORTHO05D004831 2.9e-19 98.2 78 65.4
Duzib150G0206 Durio zibethinus HOM05D003982 ORTHO05D004831 3.8e-19 97.8 73 69.9
Prupe.6G085700 Prunus persica HOM05D003982 ORTHO05D004831 3.8e-19 97.8 57 82.5
vmacro03118 Vaccinium macrocarpon HOM05D003982 ORTHO05D004831 3.8e-19 97.8 78 71.8
Cfa011440 Carpinus fangiana HOM05D003982 ORTHO05D004831 5.0e-19 97.4 72 69.4
THA.LOC104810797 Tarenaya hassleriana HOM05D003982 ORTHO05D004831 5.0e-19 97.4 75 69.3
Gorai.009G101900 Gossypium raimondii HOM05D003982 ORTHO05D004831 6.6e-19 97.1 56 82.1
CARHR154570 Cardamine hirsuta HOM05D003982 ORTHO05D004831 8.6e-19 96.7 71 67.6
CSS0045967 Camellia sinensis var. sinensis HOM05D003982 ORTHO05D004831 1.1e-18 96.3 78 64.1
CiPaw.13G100100 Carya illinoinensis HOM05D003982 ORTHO05D004831 1.1e-18 96.3 57 80.7
Lj2C1051T6 Lonicera japonica HOM05D003982 ORTHO05D004831 1.1e-18 96.3 78 66.7
Potri.001G234800 Populus trichocarpa HOM05D003982 ORTHO05D004831 1.5e-18 95.9 56 80.4
Sp5g15450 Schrenkiella parvula HOM05D003982 ORTHO05D004831 1.5e-18 95.9 71 67.6
Zm00001eb266330 Zea mays HOM05D003982 ORTHO05D004831 1.5e-18 95.9 55 78.2
Cc01_g12230 Coffea canephora HOM05D003982 ORTHO05D004831 1.9e-18 95.5 57 80.7
Eucgr.J02078 Eucalyptus grandis HOM05D003982 ORTHO05D004831 1.9e-18 95.5 54 85.2
Rhsim13G0087500 Rhododendron simsii HOM05D003982 ORTHO05D004831 1.9e-18 95.5 78 71.8
Sed0000090 Sechium edule HOM05D003982 ORTHO05D004831 1.9e-18 95.5 68 72.1
Actinidia33854 Actinidia chinensis HOM05D003982 ORTHO05D004831 3.3e-18 94.7 71 67.6
AL5G24910 Arabidopsis lyrata HOM05D003982 ORTHO05D004831 3.3e-18 94.7 71 67.6
Gohir.D05G098300 Gossypium hirsutum HOM05D003982 ORTHO05D004831 3.3e-18 94.7 56 80.4
Thhalv10002597m.g Eutrema salsugineum HOM05D003982 ORTHO05D004831 4.2e-18 94.4 71 66.2
Gohir.A05G098200 Gossypium hirsutum HOM05D003982 ORTHO05D004831 4.2e-18 94.4 56 78.6
MD03G1100700 Malus domestica HOM05D003982 ORTHO05D004831 4.2e-18 94.4 71 67.6
Sabra16G0141000 Salix brachista HOM05D003982 ORTHO05D004831 5.5e-18 94.0 56 76.8
Lj1A161T61 Lonicera japonica HOM05D003982 ORTHO05D004831 9.5e-18 93.2 78 62.8
Carub.0005s1200 Capsella rubella HOM05D003982 ORTHO05D004831 1.2e-17 92.8 71 66.2
AUR62014952 Chenopodium quinoa HOM05D003982 ORTHO05D004831 1.2e-17 92.8 77 63.6
Lsat_1_v5_gn_5_166500 Lactuca sativa HOM05D003982 ORTHO05D004831 1.2e-17 92.8 74 71.6
HanXRQChr01g0009941 Helianthus annuus HOM05D003982 ORTHO05D004831 1.6e-17 92.4 71 71.8
Os05g0115700 Oryza sativa ssp. japonica HOM05D003982 ORTHO05D004831 1.6e-17 92.4 54 79.6
CAN.G820.8 Capsicum annuum HOM05D003982 ORTHO05D004831 3.6e-17 91.3 57 78.9
Sopen06g001270 Solanum pennellii HOM05D003982 ORTHO05D004831 4.7e-17 90.9 71 63.4
Aqoxy4G03037 Aquilegia oxysepala HOM05D003982 ORTHO05D004831 6.1e-17 90.5 56 76.8
EL10Ac4g08133 Beta vulgaris HOM05D003982 ORTHO05D004831 6.1e-17 90.5 78 64.1
DCAR_006010 Daucus carota HOM05D003982 ORTHO05D004831 6.1e-17 90.5 71 63.4
MD11G1114800 Malus domestica HOM05D003982 ORTHO05D004831 6.1e-17 90.5 73 64.4
Solyc06g005290.3 Solanum lycopersicum HOM05D003982 ORTHO05D004831 6.1e-17 90.5 71 63.4
Ciclev10029203m.g Citrus clementina HOM05D003982 ORTHO05D004831 8.0e-17 90.1 54 79.6
Nitab4.5_0003179g0080 Nicotiana tabacum HOM05D003982 ORTHO05D004831 8.0e-17 90.1 57 80.7
PGSC0003DMG400015563 Solanum tuberosum HOM05D003982 ORTHO05D004831 8.0e-17 90.1 59 79.7
FAN21G4048 Fragaria x ananassa HOM05D003982 ORTHO05D004831 1.4e-16 89.4 58 81.0
Nitab4.5_0000610g0230 Nicotiana tabacum HOM05D003982 ORTHO05D004831 1.4e-16 89.4 57 78.9
Aa31LG4G15290 Aethionema arabicum HOM05D003982 ORTHO05D004831 1.8e-16 89.0 77 61.0
ATR0326G021 Amborella trichopoda HOM05D003982 ORTHO05D004831 1.8e-16 89.0 66 66.7
HanXRQChr11g0340301 Helianthus annuus HOM05D003982 ORTHO05D004831 1.8e-16 89.0 54 81.5
Oeu040286.1 Olea europaea HOM05D003982 ORTHO05D004831 1.8e-16 89.0 71 66.2
EL10Ac7g15957 Beta vulgaris HOM05D003982 ORTHO05D004831 2.3e-16 88.6 78 59.0
Zm00001eb355590 Zea mays HOM05D003982 ORTHO05D004831 2.3e-16 88.6 54 75.9
CARHR273320 Cardamine hirsuta HOM05D003982 ORTHO05D004831 4.0e-16 87.8 66 71.2
ECA248G2684 Erigeron canadensis HOM05D003982 ORTHO05D004831 4.0e-16 87.8 55 76.4
FvH4_3g34850 Fragaria vesca HOM05D003982 ORTHO05D004831 4.0e-16 87.8 79 65.8
FAN11G3073 Fragaria x ananassa HOM05D003982 ORTHO05D004831 4.0e-16 87.8 79 65.8
FAN16G2231 Fragaria x ananassa HOM05D003982 ORTHO05D004831 4.0e-16 87.8 73 68.5
Hund05010 Selenicereus undatus HOM05D003982 ORTHO05D004831 4.0e-16 87.8 78 60.3
Solyc11g073190.2 Solanum lycopersicum HOM05D003982 ORTHO05D004831 4.0e-16 87.8 49 87.8
Sopen11g030820 Solanum pennellii HOM05D003982 ORTHO05D004831 4.0e-16 87.8 49 87.8
PSO206G0007 Papaver somniferum HOM05D003982 ORTHO05D004831 6.8e-16 87.0 54 77.8
A02p06910 Brassica napus HOM05D003982 ORTHO05D004831 8.9e-16 86.7 67 68.7
AT5G59740 Arabidopsis thaliana HOM05D003982 ORTHO05D004831 1.2e-15 86.3 67 70.1
DCAR_023863 Daucus carota HOM05D003982 ORTHO05D004831 1.2e-15 86.3 76 61.8
Nitab4.5_0010238g0010 Nicotiana tabacum HOM05D003982 ORTHO05D004831 1.2e-15 86.3 54 79.6
FAN25G3842 Fragaria x ananassa HOM05D003982 ORTHO05D004831 1.5e-15 85.9 58 79.3
Sp6g21410 Schrenkiella parvula HOM05D003982 ORTHO05D004831 1.5e-15 85.9 65 67.7
BcaC04g19625 Brassica carinata HOM05D003982 ORTHO05D004831 2.0e-15 85.5 66 69.7
C09p52220 Brassica napus HOM05D003982 ORTHO05D004831 2.0e-15 85.5 66 69.7
BolC9t58089H Brassica oleracea HOM05D003982 ORTHO05D004831 2.0e-15 85.5 66 69.7
CAN.G241.39 Capsicum annuum HOM05D003982 ORTHO05D004831 2.0e-15 85.5 47 85.1
PSO339G1754 Papaver somniferum HOM05D003982 ORTHO05D004831 2.0e-15 85.5 54 77.8
SGA_v2.0_scaffold39G15249 Striga asiatica HOM05D003982 ORTHO05D004831 2.0e-15 85.5 57 73.7
A10p16970 Brassica napus HOM05D003982 ORTHO05D004831 2.6e-15 85.1 66 69.7
BraA10t43781Z Brassica rapa HOM05D003982 ORTHO05D004831 2.6e-15 85.1 66 69.7
Carub.0008s2039 Capsella rubella HOM05D003982 ORTHO05D004831 3.4e-15 84.7 50 82.0
CDE02G1453 Ceratophyllum demersum HOM05D003982 ORTHO05D004831 5.7e-15 84.0 54 75.9
AL8G36260 Arabidopsis lyrata HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
BcaB05g22537 Brassica carinata HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
BcaC01g06551 Brassica carinata HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
A03p11500 Brassica napus HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
C03p13320 Brassica napus HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
BolC3t13794H Brassica oleracea HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
BraA02t05770Z Brassica rapa HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
BraA03t10464Z Brassica rapa HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
Thhalv10014012m.g Eutrema salsugineum HOM05D003982 ORTHO05D004831 7.5e-15 83.6 46 87.0
MSTRG.12630 Avicennia marina HOM05D003982 ORTHO05D004831 1.3e-14 82.8 57 73.7
BolC2t07323H Brassica oleracea HOM05D003982 ORTHO05D004831 1.3e-14 82.8 67 65.7
SMO358G0604 Selaginella moellendorffii HOM05D003982 ORTHO05D004831 2.2e-14 82.0 47 76.6
Oeu058524.1 Olea europaea HOM05D003982 ORTHO05D004831 4.1e-13 77.8 76 57.9
SalBow3G3142 Salvia bowleyana HOM05D003982 ORTHO05D004831 7.0e-13 77.0 71 59.2
VMungo1127G2086 Vigna mungo HOM05D003982 ORTHO05D004831 1.0e-11 73.2 35 97.1
TAR636G3601 Trochodendron aralioides HOM05D003982 ORTHO05D004831 2.3e-11 72.0 35 94.3
COL.COLO4_18437 Corchorus olitorius HOM05D003982 ORTHO05D004831 6.6e-11 70.5 36 91.7
MCO04G404 Micromonas commoda HOM05D003982 ORTHO05D004831 8.6e-11 70.1 56 58.9
PGR119G1985 Punica granatum HOM05D003982 ORTHO05D004831 1.1e-10 69.7 48 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2665 Anthoceros agrestis HOM05D003982 ORTHO05D004831 1.5e-10 69.3 59 59.3
Pp3c14_24680 Physcomitrium patens HOM05D003982 ORTHO05D004831 1.5e-10 69.3 79 49.4
Hma1.2p1_0846F.1_g227680 Hydrangea macrophylla HOM05D003982 ORTHO05D004831 4.3e-10 67.8 36 91.7
Cre06.g260100 Chlamydomonas reinhardtii HOM05D003982 ORTHO05D004831 7.3e-10 67.0 50 62.0
unitig_744.g24622 Utricularia gibba HOM05D003982 ORTHO05D004831 2.8e-09 65.1 37 86.5
Mapoly0039s0069 Marchantia polymorpha HOM05D003982 ORTHO05D004831 8.0e-09 63.5 47 61.7
AUR62029186 Chenopodium quinoa HOM05D003982 ORTHO05D004831 1.8e-08 62.4 38 76.3
PRCOL_00003646 Prasinoderma coloniale HOM05D003982 ORTHO05D004831 2.0e-07 58.9 54 55.6
Cre16.g676900 Chlamydomonas reinhardtii HOM05D003982 ORTHO05D004831 2.2e-06 55.5 54 53.7


User provided reference genes

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