Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 2.6e-183 645.2 310 100.0
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 4.0e-144 515.0 323 79.3
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 2.5e-130 469.2 306 79.4
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 8.1e-129 464.2 309 75.1
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 2.3e-123 446.0 314 71.7
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 4.3e-122 441.8 303 73.6
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 5.6e-122 441.4 306 71.2
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 6.2e-121 438.0 295 71.9
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 1.5e-119 433.3 306 69.9
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 1.5e-119 433.3 293 72.4
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 2.0e-119 433.0 291 72.9
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 7.6e-119 431.0 309 69.6
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 9.9e-119 430.6 310 70.3
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 3.8e-118 428.7 301 70.1
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 3.8e-118 428.7 306 68.0
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 6.4e-118 427.9 312 68.9
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 6.4e-118 427.9 306 68.3
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 9.3e-117 424.1 287 72.5
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.6e-116 423.3 291 70.8
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 2.7e-116 422.5 307 69.7
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 2.7e-116 422.5 293 71.0
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 3.5e-116 422.2 309 68.6
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.3e-115 420.2 314 66.2
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 1.8e-115 419.9 306 69.3
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.1e-114 417.2 324 64.2
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.5e-114 416.8 293 70.6
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 9.6e-114 414.1 289 69.9
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 6.2e-113 411.4 291 68.4
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 1.4e-112 410.2 310 68.4
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.8e-112 409.8 287 70.4
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 5.3e-112 408.3 330 63.0
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 9.0e-112 407.5 315 64.1
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 1.2e-111 407.1 315 64.1
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 1.2e-111 407.1 295 68.8
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 2.0e-111 406.4 317 65.0
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 2.6e-111 406.0 293 67.9
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.6e-111 406.0 305 64.3
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 1.0e-110 404.1 311 64.6
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 1.0e-110 404.1 312 65.1
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 4.9e-110 401.7 280 68.9
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 6.5e-110 401.4 291 68.0
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.4e-109 400.2 296 67.6
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 2.5e-109 399.4 339 61.1
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.5e-109 399.4 338 61.2
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 4.2e-109 398.7 299 66.6
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 9.3e-109 397.5 308 64.6
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.2e-108 397.1 293 66.2
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 1.2e-108 397.1 308 64.6
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 3.5e-108 395.6 283 67.8
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 4.6e-108 395.2 298 66.1
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 1.0e-107 394.0 281 68.0
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.0e-107 394.0 312 64.4
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 1.8e-107 393.3 304 64.5
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.3e-107 392.9 296 65.5
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 6.7e-107 391.3 312 64.1
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 1.1e-106 390.6 306 64.7
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.1e-106 390.6 297 66.0
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 1.9e-106 389.8 280 67.5
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.9e-106 389.8 302 64.9
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 2.5e-106 389.4 312 63.5
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 3.3e-106 389.0 295 66.1
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 3.3e-106 389.0 320 61.6
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 3.3e-106 389.0 300 63.7
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 7.4e-106 387.9 300 63.3
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.6e-105 386.7 288 66.0
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 2.2e-105 386.3 340 58.8
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 2.8e-105 386.0 304 63.2
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 2.8e-105 386.0 309 61.8
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 3.7e-105 385.6 307 63.8
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 8.2e-105 384.4 292 64.4
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 1.1e-104 384.0 310 63.9
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 3.1e-104 382.5 253 75.5
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 1.2e-103 380.6 308 61.7
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 2.0e-103 379.8 313 62.9
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 5.0e-102 375.2 424 50.0
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 3.2e-101 372.5 280 65.7
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 6.1e-100 368.2 275 66.9
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 6.7e-99 364.8 333 58.9
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 2.8e-97 359.4 290 63.8
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.1e-92 343.2 300 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 2.6e-90 336.3 300 55.7
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 3.1e-88 329.3 254 64.6
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 2.6e-87 326.2 305 53.4
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 6.5e-86 321.6 293 57.7
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 5.5e-85 318.5 292 56.5
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 3.7e-81 305.8 335 51.6
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 5.5e-77 292.0 301 51.8
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 4.2e-69 265.8 178 70.8
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 7.2e-69 265.0 196 68.4
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 1.8e-67 260.4 207 64.7
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 3.4e-66 256.1 172 74.4
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 2.2e-65 253.4 193 65.3
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 3.1e-64 249.6 188 68.1
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 4.5e-63 245.7 182 67.6
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 5.0e-62 242.3 273 46.2
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 6.1e-60 235.3 172 63.4
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 5.2e-59 232.3 277 43.7
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.2e-58 231.1 247 53.8
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.7e-57 227.3 284 43.3
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.0e-50 203.8 145 71.0
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.4e-48 197.6 160 59.4
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 2.3e-43 180.3 139 65.5
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 2.9e-33 146.7 91 69.2
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 1.6e-31 141.0 315 33.7
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.0e-30 138.3 278 34.5
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 3.4e-26 123.2 327 30.0
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 7.6e-26 122.1 59 89.8
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.9e-24 117.5 75 69.3
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.1e-23 114.0 74 70.3
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 4.3e-21 106.3 134 46.3
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 7.6e-18 95.5 150 42.7
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 7.3e-13 79.0 222 26.1
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-11 74.3 68 47.1
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 9.9e-10 68.6 175 32.6
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 2.2e-09 67.4 357 24.9
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 1.6e-07 61.2 58 53.4


User provided reference genes

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