Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 9.4e-74 280.4 175 100.0
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 2.6e-60 235.7 136 87.5
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 1.0e-59 233.8 136 86.0
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 9.4e-58 227.3 136 83.8
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 5.4e-53 211.5 136 79.4
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 8.0e-49 197.6 136 75.0
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 4.0e-48 195.3 126 77.8
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 2.6e-47 192.6 136 71.3
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 1.1e-45 187.2 132 74.2
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.6e-44 183.3 138 68.8
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 2.6e-39 166.0 133 67.7
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 1.3e-38 163.7 134 63.4
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 8.0e-33 144.4 139 54.0
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.4e-29 133.7 134 53.7
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 2.0e-28 129.8 140 53.6
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.7e-28 129.4 134 51.5
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 3.5e-28 129.0 140 52.9
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 3.5e-28 129.0 134 51.5
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 6.0e-28 128.3 139 51.1
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 6.0e-28 128.3 138 52.9
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 7.8e-28 127.9 137 54.0
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 7.8e-28 127.9 137 54.0
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 1.7e-27 126.7 134 50.7
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 2.3e-27 126.3 134 56.0
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 6.6e-27 124.8 134 50.0
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.5e-26 122.9 132 50.0
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 1.2e-25 120.6 139 49.6
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.6e-25 119.0 119 56.3
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 4.7e-25 118.6 135 49.6
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 6.2e-25 118.2 134 49.3
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 6.2e-25 118.2 117 52.1
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 8.1e-25 117.9 134 56.0
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 1.4e-24 117.1 133 51.9
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 1.4e-24 117.1 134 55.2
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 1.8e-24 116.7 131 49.6
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 4.0e-24 115.5 134 55.2
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 6.8e-24 114.8 136 49.3
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 1.5e-23 113.6 134 46.3
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 1.5e-23 113.6 134 53.0
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.5e-23 113.6 130 53.1
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.4e-23 112.5 130 52.3
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 5.8e-23 111.7 132 48.5
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 5.8e-23 111.7 144 50.0
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 9.8e-23 110.9 138 50.7
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 2.2e-22 109.8 133 54.1
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 1.1e-21 107.5 149 44.3
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.1e-21 107.5 131 49.6
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 2.4e-21 106.3 130 50.8
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 3.2e-21 105.9 133 47.4
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.2e-21 105.9 136 47.1
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 4.1e-21 105.5 128 50.0
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 5.4e-21 105.1 130 46.2
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 5.4e-21 105.1 130 50.0
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 7.1e-21 104.8 135 47.4
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 9.2e-21 104.4 103 54.4
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 1.6e-20 103.6 135 50.4
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 2.1e-20 103.2 137 43.1
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.7e-20 102.8 130 49.2
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 4.6e-20 102.1 127 46.5
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 7.8e-20 101.3 152 44.1
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.0e-19 100.9 136 45.6
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 2.3e-19 99.8 127 46.5
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 3.9e-19 99.0 132 46.2
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 6.6e-19 98.2 127 44.1
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.1e-18 97.4 131 48.1
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 3.3e-18 95.9 131 42.7
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 4.3e-18 95.5 130 43.1
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 5.6e-18 95.1 130 43.8
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 1.6e-17 93.6 131 42.7
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 2.1e-17 93.2 131 42.0
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 3.6e-17 92.4 125 46.4
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 3.6e-17 92.4 140 40.7
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 2.3e-16 89.7 136 42.6
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 3.1e-16 89.4 134 40.3
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 3.1e-16 89.4 134 40.3
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 4.0e-16 89.0 137 43.8
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 5.2e-16 88.6 86 58.1
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 6.8e-16 88.2 136 41.9
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 1.2e-15 87.4 133 40.6
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 1.5e-15 87.0 136 41.9
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.0e-15 86.7 145 37.2
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 9.9e-15 84.3 131 41.2
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 1.3e-14 84.0 127 44.9
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.7e-14 83.6 127 44.9
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 2.9e-14 82.8 126 42.9
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 8.4e-14 81.3 78 56.4
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 2.4e-13 79.7 131 41.2
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 5.4e-13 78.6 114 41.2
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 1.6e-12 77.0 103 45.6
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 1.6e-12 77.0 119 40.3
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 7.8e-12 74.7 175 30.3
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 3.0e-11 72.8 88 46.6
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 6.6e-11 71.6 110 42.7
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 1.5e-10 70.5 97 44.3
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 1.9e-10 70.1 136 36.0
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 2.5e-10 69.7 95 43.2
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 7.3e-10 68.2 86 48.8
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 1.6e-09 67.0 95 43.2
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 1.6e-09 67.0 95 43.2
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 1.6e-09 67.0 65 53.8
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 4.7e-09 65.5 80 48.8
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 6.2e-09 65.1 81 48.1
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.8e-08 63.5 76 48.7
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 5.2e-08 62.0 61 55.7
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 5.2e-08 62.0 91 42.9
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.2e-07 60.8 67 50.7
Gorai.009G395900 Gossypium raimondii HOM05D005992 ORTHO05D007476 1.5e-07 60.5 53 56.6
Gohir.D07G124900 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.0e-07 60.1 53 58.5
Gohir.D11G007175 Gossypium hirsutum HOM05D005992 ORTHO05D007476 5.8e-07 58.5 53 56.6
Gohir.D11G304103 Gossypium hirsutum HOM05D005992 ORTHO05D007476 7.6e-07 58.2 53 56.6
Gohir.D09G141833 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.9e-06 56.2 53 54.7


User provided reference genes

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