Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 1.2e-196 689.9 402 100.0
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 9.2e-133 477.6 327 77.1
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 3.0e-131 472.6 324 74.4
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 5.6e-114 415.2 296 74.7
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 5.6e-114 415.2 296 74.7
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 3.0e-107 392.9 329 65.0
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 4.2e-101 372.5 328 62.8
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 2.3e-99 366.7 328 59.1
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 1.7e-94 350.5 332 57.2
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 1.8e-91 340.5 314 59.6
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 2.1e-89 333.6 324 57.7
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 4.8e-89 332.4 327 55.4
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 1.1e-88 331.3 325 55.7
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 3.4e-87 326.2 328 58.8
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 9.3e-85 318.2 334 54.2
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 6.7e-83 312.0 328 55.5
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 6.7e-83 312.0 330 52.7
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 7.4e-82 308.5 329 54.1
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 9.6e-82 308.1 328 54.0
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 4.8e-81 305.8 328 52.7
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 3.1e-80 303.1 332 51.8
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 3.1e-80 303.1 328 53.7
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 6.9e-80 302.0 322 52.2
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 1.2e-79 301.2 319 52.7
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 2.0e-79 300.4 327 52.0
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 2.6e-79 300.1 334 51.8
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 3.4e-79 299.7 332 50.6
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 6.5e-78 295.4 322 51.2
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 8.5e-78 295.0 319 52.7
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 7.2e-77 292.0 347 48.7
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 7.2e-77 292.0 340 50.6
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 1.6e-76 290.8 340 51.8
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 3.6e-76 289.7 326 50.9
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 1.9e-74 283.9 341 50.7
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 7.4e-74 282.0 331 48.3
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 1.3e-73 281.2 359 44.6
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 3.7e-73 279.6 333 48.3
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 2.4e-72 276.9 333 48.0
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 5.3e-72 275.8 321 48.3
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 1.2e-71 274.6 325 47.7
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 1.0e-70 271.6 328 48.5
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 1.3e-70 271.2 333 46.8
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 1.7e-70 270.8 321 48.0
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 6.5e-70 268.9 321 47.4
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 6.5e-70 268.9 343 47.2
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 1.1e-69 268.1 324 46.6
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 1.1e-69 268.1 338 46.7
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.4e-69 267.7 350 46.3
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 2.5e-69 266.9 351 46.4
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 4.2e-69 266.2 350 46.3
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 5.5e-69 265.8 321 47.7
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 7.2e-69 265.4 328 47.6
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.2e-68 264.6 348 45.4
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 2.1e-68 263.8 348 45.7
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 2.1e-68 263.8 320 47.2
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 3.6e-68 263.1 322 46.6
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 1.4e-67 261.2 331 46.2
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 1.4e-67 261.2 338 46.2
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 2.6e-66 256.9 328 44.5
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 3.3e-66 256.5 368 44.3
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 9.7e-66 255.0 371 44.5
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 1.5e-63 247.7 309 47.2
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 1.7e-62 244.2 294 48.0
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 2.2e-62 243.8 318 43.7
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 3.2e-61 240.0 313 45.4
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 5.5e-61 239.2 324 44.8
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 3.6e-60 236.5 317 44.2
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 6.1e-60 235.7 357 44.3
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 7.9e-60 235.3 355 43.1
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 1.0e-59 235.0 316 43.0
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 1.4e-59 234.6 315 45.4
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 7.4e-58 228.8 320 46.6
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 1.1e-56 224.9 334 40.7
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 2.4e-56 223.8 319 42.3
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 4.1e-56 223.0 363 42.7
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 5.3e-56 222.6 248 51.6
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 8.5e-54 215.3 214 50.9
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 7.2e-53 212.2 332 42.2
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 2.8e-49 200.3 353 40.5
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 4.2e-45 186.4 208 47.1
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 1.8e-43 181.0 210 47.6
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 2.3e-43 180.6 209 45.9
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 4.8e-41 172.9 340 39.1
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 4.8e-41 172.9 349 38.1
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 5.5e-37 159.5 330 36.1
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 3.8e-30 136.7 146 48.6
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.5e-29 134.8 124 56.5
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 1.5e-29 134.8 336 32.7
Glyma.14G058602 Glycine max HOM05D007537 ORTHO05D009602 3.3e-29 133.7 127 59.8
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 2.6e-26 124.0 334 30.8
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 7.0e-24 115.9 313 31.3
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 2.3e-19 100.9 102 52.9
Oeu004692.1 Olea europaea HOM05D007537 ORTHO05D009602 2.0e-18 97.8 159 39.6
SEGI_41305 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 3.7e-17 93.6 328 25.9
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 3.2e-16 90.5 326 25.8
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 3.5e-15 87.0 335 25.4
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 3.5e-15 87.0 335 25.4
Lalb_Chr19g0133601 Lupinus albus HOM05D000858 ORTHO05D001578 4.9e-09 66.6 276 24.3
AUR62024851 Chenopodium quinoa HOM05D000018 ORTHO05D001440 9.2e-08 62.4 290 23.1
Medtr8g461330 Medicago truncatula HOM05D000858 ORTHO05D001578 1.6e-07 61.6 251 23.9
Ah.12g063540 Amaranthus hybridus HOM05D000018 ORTHO05D001440 3.5e-07 60.5 198 28.3
CSS0006235 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000453 6.0e-07 59.7 252 26.2
Nitab4.5_0000662g0210 Nicotiana tabacum HOM05D000018 ORTHO05D010444 6.0e-07 59.7 264 22.3
C03p24920 Brassica napus HOM05D000858 ORTHO05D001578 7.8e-07 59.3 268 27.2
BolC3t14883H Brassica oleracea HOM05D000858 ORTHO05D001578 7.8e-07 59.3 268 27.2
Pp3c6_22580 Physcomitrium patens HOM05D000018 ORTHO05D001513 7.8e-07 59.3 222 25.2
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 1.0e-06 58.9 297 24.9
MBI10_g30415_MAGBIO Magnolia biondii HOM05D000858 ORTHO05D001578 1.0e-06 58.9 244 25.4
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 1.0e-06 58.9 292 24.7
FAN17G0679 Fragaria x ananassa HOM05D000018 ORTHO05D001766 1.3e-06 58.5 264 27.3
CSS0010875 Camellia sinensis var. sinensis HOM05D000858 ORTHO05D001578 1.7e-06 58.2 322 23.6
Lsat_1_v5_gn_1_113100 Lactuca sativa HOM05D000018 ORTHO05D000187 1.7e-06 58.2 214 25.7
MD11G1272000 Malus domestica HOM05D000018 ORTHO05D000187 1.7e-06 58.2 199 27.6
Peaxi162Scf00111g00922 Petunia axillaris HOM05D000858 ORTHO05D001578 1.7e-06 58.2 267 26.6
Lsat_1_v5_gn_1_113121 Lactuca sativa HOM05D000018 ORTHO05D000187 2.3e-06 57.8 212 25.9
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 3.9e-06 57.0 292 25.0
Nitab4.5_0004447g0040 Nicotiana tabacum HOM05D000018 ORTHO05D000187 3.9e-06 57.0 185 24.9
CDE09G0701 Ceratophyllum demersum HOM05D000858 ORTHO05D001578 5.1e-06 56.6 252 27.8
Ciclev10001648m.g Citrus clementina HOM05D000018 ORTHO05D000187 5.1e-06 56.6 216 25.5
FvH4_4g36510 Fragaria vesca HOM05D000018 ORTHO05D001766 5.1e-06 56.6 263 25.9
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 8.6e-06 55.8 326 23.9
HanXRQChr11g0345921 Helianthus annuus HOM05D000018 ORTHO05D000187 8.6e-06 55.8 320 22.5
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 8.6e-06 55.8 281 23.8


User provided reference genes

Program Settings