Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 8.3e-129 463.8 242 100.0
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 6.6e-94 347.8 241 77.2
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 3.3e-93 345.5 242 77.3
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 1.1e-83 313.9 249 67.9
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 1.3e-76 290.4 246 64.2
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 4.8e-76 288.5 245 63.3
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 8.1e-76 287.7 249 62.7
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 5.3e-75 285.0 210 69.0
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 9.9e-74 280.8 210 67.6
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.9e-72 276.6 237 62.4
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 3.0e-70 269.2 184 70.7
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 5.1e-70 268.5 184 70.7
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 8.7e-70 267.7 186 70.4
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.5e-69 266.9 235 57.9
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.5e-69 266.2 184 68.5
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 3.3e-69 265.8 188 68.6
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 4.3e-69 265.4 228 60.1
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 7.4e-69 264.6 181 70.2
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 2.1e-68 263.1 214 61.7
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 2.8e-68 262.7 184 69.6
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 4.8e-68 261.9 185 67.0
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 6.2e-68 261.5 184 66.3
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 5.3e-67 258.5 179 68.2
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 6.9e-67 258.1 210 59.5
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 9.0e-67 257.7 211 59.2
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.5e-66 256.9 181 67.4
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 1.5e-66 256.9 179 69.3
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.5e-66 256.9 206 60.2
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 2.6e-66 256.1 188 62.2
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 3.4e-66 255.8 219 59.8
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 7.6e-66 254.6 182 66.5
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 7.6e-66 254.6 179 69.3
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 1.0e-65 254.2 181 65.7
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 1.0e-65 254.2 179 67.6
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 1.3e-65 253.8 182 66.5
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.3e-65 253.8 180 66.7
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.7e-65 253.4 220 56.8
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.9e-65 252.7 183 66.1
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 2.9e-65 252.7 188 64.4
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 4.9e-65 251.9 184 65.2
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.1e-64 250.8 177 67.8
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.4e-64 250.4 225 58.2
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 1.4e-64 250.4 172 68.0
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 4.2e-64 248.8 177 63.8
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 4.2e-64 248.8 224 57.6
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 4.2e-64 248.8 186 65.1
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 7.1e-64 248.1 223 57.4
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 7.1e-64 248.1 172 67.4
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 9.3e-64 247.7 184 60.3
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 9.3e-64 247.7 188 62.8
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.2e-63 247.3 177 66.1
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 2.7e-63 246.1 186 62.4
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.7e-63 246.1 199 61.3
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 3.5e-63 245.7 167 68.3
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 6.0e-63 245.0 177 65.0
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.3e-62 243.8 199 60.8
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.3e-62 243.8 172 65.7
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.3e-62 243.0 177 64.4
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 5.1e-62 241.9 186 60.2
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 5.1e-62 241.9 181 65.7
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 6.7e-62 241.5 199 60.3
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 8.7e-62 241.1 177 62.7
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 8.7e-62 241.1 177 63.8
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.1e-61 240.7 177 65.0
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-61 240.7 177 63.3
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.1e-61 240.7 177 63.3
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 1.5e-61 240.4 177 62.7
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.5e-61 240.4 172 66.3
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 2.5e-61 239.6 221 52.5
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 2.5e-61 239.6 172 64.5
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 4.3e-61 238.8 197 56.9
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 5.7e-61 238.4 188 60.6
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 5.7e-61 238.4 188 62.8
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 7.4e-61 238.0 188 58.5
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 9.6e-61 237.7 188 60.1
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.3e-60 237.3 186 58.1
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.3e-60 237.3 182 59.9
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.3e-60 237.3 182 59.9
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.1e-60 236.5 188 60.1
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.1e-60 236.5 186 59.7
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 2.1e-60 236.5 184 59.8
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 2.8e-60 236.1 186 57.5
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 6.2e-60 235.0 186 57.5
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.4e-59 233.8 221 53.8
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 1.4e-59 233.8 167 65.9
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 1.8e-59 233.4 177 62.7
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.8e-59 233.4 182 63.2
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 1.8e-59 233.4 184 62.0
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 5.3e-59 231.9 183 60.7
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 9.0e-59 231.1 176 64.2
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 2.0e-58 229.9 163 65.6
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 3.4e-58 229.2 186 55.4
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.0e-57 227.6 177 61.6
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 3.8e-57 225.7 186 55.4
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 3.8e-57 225.7 186 55.4
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.1e-56 224.2 186 55.9
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.9e-56 223.4 144 72.9
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 3.2e-56 222.6 173 58.4
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.6e-55 220.3 167 60.5
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 2.1e-55 219.9 154 65.6
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 3.5e-55 219.2 210 56.2
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 7.9e-55 218.0 152 62.5
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 6.7e-54 214.9 174 56.3
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 8.7e-54 214.5 174 55.7
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 1.1e-53 214.2 172 57.6
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 9.7e-53 211.1 172 59.3
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 1.3e-52 210.7 227 49.8
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.4e-48 197.2 153 59.5
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 6.1e-47 191.8 167 56.3
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 5.1e-46 188.7 131 70.2
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 2.8e-44 183.0 151 59.6
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 6.3e-44 181.8 150 60.0
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 8.2e-44 181.4 159 49.7
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.1e-43 181.0 128 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.3e-41 174.1 192 44.3
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 2.2e-41 173.3 135 59.3
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 6.5e-41 171.8 142 55.6
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.5e-40 169.9 127 63.8
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-38 164.1 129 60.5
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 6.7e-38 161.8 127 59.1
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 6.7e-38 161.8 127 59.1
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 9.1e-35 151.4 95 71.6
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 4.5e-34 149.1 111 62.2
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 4.0e-30 136.0 82 74.4
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 5.2e-30 135.6 153 48.4
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 1.8e-22 110.5 84 65.5
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 6.8e-22 108.6 82 64.6
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 7.7e-18 95.1 77 62.3
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 3.2e-16 89.7 184 29.3
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 2.3e-14 83.6 50 76.0
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 9.8e-13 78.2 100 42.0
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 3.5e-10 69.7 128 27.3
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 4.7e-07 59.3 54 53.7
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 4.0e-06 56.2 139 28.1
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 8.9e-06 55.1 35 62.9


User provided reference genes

Program Settings