Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38336 Trifolium pratense HOM05D003510 ORTHO05D004144 4.7e-64 247.7 121 100.0
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 8.0e-32 140.6 107 67.3
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 2.6e-30 135.6 106 67.9
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 8.6e-26 120.6 107 59.8
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 2.5e-25 119.0 107 58.9
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 1.2e-22 110.2 97 59.8
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 5.8e-22 107.8 107 54.2
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 9.2e-20 100.5 98 55.1
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 2.0e-19 99.4 96 55.2
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 2.7e-19 99.0 107 51.4
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 6.0e-19 97.8 98 54.1
Psat0s3549g0120 Pisum sativum HOM05D003510 ORTHO05D004144 1.5e-17 93.2 109 54.1
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 2.8e-16 89.0 109 48.6
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 2.8e-16 89.0 107 49.5
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 8.3e-13 77.4 73 52.1
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 1.9e-12 76.3 99 45.5
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 2.4e-12 75.9 93 44.1
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 5.4e-12 74.7 93 49.5
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 7.1e-12 74.3 114 43.9
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 7.1e-12 74.3 60 55.0
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 7.1e-12 74.3 93 49.5
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 9.2e-12 73.9 72 50.0
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.2e-11 73.6 70 51.4
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 1.6e-11 73.2 91 42.9
Gohir.A04G098000 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.6e-11 73.2 72 47.2
Dinv21067 Davidia involucrata HOM05D003510 ORTHO05D004144 2.1e-11 72.8 61 59.0
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 2.1e-11 72.8 72 47.2
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 2.1e-11 72.8 72 47.2
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 2.7e-11 72.4 72 51.4
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 2.7e-11 72.4 106 44.3
Haze_00608 Corylus avellana HOM05D003510 ORTHO05D004144 6.0e-11 71.2 112 36.6
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 6.0e-11 71.2 61 57.4
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 7.8e-11 70.9 96 42.7
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 1.0e-10 70.5 85 48.2
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 1.0e-10 70.5 106 44.3
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 1.3e-10 70.1 83 47.0
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 1.3e-10 70.1 90 47.8
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 1.3e-10 70.1 93 47.3
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 1.7e-10 69.7 72 51.4
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.7e-10 69.7 107 40.2
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 1.7e-10 69.7 103 44.7
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 2.3e-10 69.3 57 56.1
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.3e-10 69.3 57 56.1
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 2.3e-10 69.3 108 38.0
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 3.0e-10 68.9 67 47.8
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.0e-10 68.9 92 44.6
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 3.9e-10 68.6 93 39.8
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 5.1e-10 68.2 92 42.4
Gohir.D04G137825 Gossypium hirsutum HOM05D003510 ORTHO05D004144 5.1e-10 68.2 91 38.5
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 5.1e-10 68.2 83 42.2
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 6.6e-10 67.8 110 40.9
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 6.6e-10 67.8 99 40.4
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 6.6e-10 67.8 96 39.6
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 1.1e-09 67.0 101 42.6
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 1.1e-09 67.0 60 53.3
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 1.1e-09 67.0 81 43.2
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.5e-09 66.6 63 47.6
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.5e-09 66.6 83 44.6
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 1.5e-09 66.6 106 41.5
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.9e-09 66.2 103 40.8
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 1.9e-09 66.2 69 49.3
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 2.5e-09 65.9 76 44.7
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 2.5e-09 65.9 71 49.3
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 2.5e-09 65.9 98 39.8
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 3.3e-09 65.5 79 48.1
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 3.3e-09 65.5 99 39.4
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 4.3e-09 65.1 82 45.1
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 4.3e-09 65.1 89 46.1
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 4.3e-09 65.1 92 43.5
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 4.3e-09 65.1 98 39.8
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 5.6e-09 64.7 87 39.1
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 5.6e-09 64.7 44 61.4
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 7.3e-09 64.3 82 43.9
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 7.3e-09 64.3 82 43.9
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 7.3e-09 64.3 41 68.3
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 9.5e-09 63.9 71 49.3
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 9.5e-09 63.9 97 42.3
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 9.5e-09 63.9 41 70.7
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 9.5e-09 63.9 41 70.7
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 1.2e-08 63.5 80 40.0
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 1.2e-08 63.5 101 36.6
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.2e-08 63.5 92 42.4
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 1.6e-08 63.2 52 59.6
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 1.6e-08 63.2 91 37.4
Actinidia02892 Actinidia chinensis HOM05D003510 ORTHO05D004144 2.1e-08 62.8 43 62.8
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 2.1e-08 62.8 81 40.7
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.1e-08 62.8 92 42.4
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 2.8e-08 62.4 41 63.4
MSTRG.13540 Avicennia marina HOM05D003510 ORTHO05D004144 3.6e-08 62.0 43 62.8
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 3.6e-08 62.0 69 43.5
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.6e-08 62.0 42 61.9
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 3.6e-08 62.0 94 37.2
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 4.7e-08 61.6 59 49.2
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 4.7e-08 61.6 90 42.2
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 4.7e-08 61.6 35 74.3
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 6.2e-08 61.2 92 38.0
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 6.2e-08 61.2 73 46.6
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 6.2e-08 61.2 73 46.6
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 8.1e-08 60.8 86 34.9
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 8.1e-08 60.8 44 65.9
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 1.1e-07 60.5 97 41.2
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.1e-07 60.5 75 45.3
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.4e-07 60.1 69 42.0
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.4e-07 60.1 60 51.7
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 1.4e-07 60.1 56 48.2
BolC6t39254H Brassica oleracea HOM05D001294 ORTHO05D001178 1.8e-07 59.7 83 43.4
Gorai.012G122400 Gossypium raimondii HOM05D003510 ORTHO05D004144 1.8e-07 59.7 91 37.4
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 2.3e-07 59.3 104 38.5
Os04g0553300 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 3.1e-07 58.9 54 50.0
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.1e-07 58.9 41 56.1
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 4.0e-07 58.5 70 45.7
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 4.0e-07 58.5 70 44.3
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 4.0e-07 58.5 60 46.7
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 4.0e-07 58.5 42 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 5.2e-07 58.2 43 58.1
AUR62002850 Chenopodium quinoa HOM05D003510 ORTHO05D004144 5.2e-07 58.2 72 37.5
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 6.8e-07 57.8 89 40.4
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 6.8e-07 57.8 48 52.1
AL1G50030 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 8.9e-07 57.4 68 41.2
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 8.9e-07 57.4 34 64.7
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 1.2e-06 57.0 50 50.0
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 1.2e-06 57.0 31 67.7
AT1G35250 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.5e-06 56.6 45 53.3
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 1.5e-06 56.6 61 49.2
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 1.5e-06 56.6 32 65.6
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 1.5e-06 56.6 75 41.3
Mapoly0104s0006 Marchantia polymorpha HOM05D003510 ORTHO05D004144 2.0e-06 56.2 37 62.2
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 2.0e-06 56.2 94 38.3
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 3.4e-06 55.5 33 69.7
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 3.4e-06 55.5 33 69.7
CARHR259050 Cardamine hirsuta HOM05D003510 ORTHO05D004144 4.4e-06 55.1 62 46.8
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 4.4e-06 55.1 75 40.0
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 5.8e-06 54.7 64 45.3
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 5.8e-06 54.7 64 45.3
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 5.8e-06 54.7 64 45.3
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 5.8e-06 54.7 40 57.5
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 5.8e-06 54.7 41 51.2
SGA_v2.0_scaffold211G42096 Striga asiatica HOM05D003510 ORTHO05D004144 5.8e-06 54.7 39 56.4
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 7.6e-06 54.3 41 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 9.9e-06 53.9 43 53.5
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 9.9e-06 53.9 31 71.0
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 9.9e-06 53.9 33 66.7
SEGI_30670 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 9.9e-06 53.9 33 66.7


User provided reference genes

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