Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38293 Trifolium pratense HOM05D002685 ORTHO05D001487 2.4e-106 389.4 288 100.0
TPR.G2897 Trifolium pratense HOM05D002685 ORTHO05D001487 4.8e-91 338.6 296 81.4
TPR.G15496 Trifolium pratense HOM05D002685 ORTHO05D001487 2.0e-52 210.3 299 63.2
Medtr7g022490 Medicago truncatula HOM05D002685 ORTHO05D001487 2.7e-49 199.9 346 56.1
Medtr7g022790 Medicago truncatula HOM05D002685 ORTHO05D001487 2.7e-49 199.9 346 56.1
Psat3g186840 Pisum sativum HOM05D002685 ORTHO05D001487 6.1e-46 188.7 282 51.8
Ca_07157_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 6.5e-40 168.7 309 53.7
Ca_07143_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 1.6e-38 164.1 334 46.1
Psat3g186880 Pisum sativum HOM05D002685 ORTHO05D001487 1.8e-34 150.6 290 50.0
Psat3g186800 Pisum sativum HOM05D002685 ORTHO05D001487 6.6e-32 142.1 124 69.4
Lj1g0010375 Lotus japonicus HOM05D002685 ORTHO05D001487 8.3e-27 125.2 354 42.4
Psat3g186080 Pisum sativum HOM05D002685 ORTHO05D001487 2.7e-25 120.2 86 80.2
TPR.G27398 Trifolium pratense HOM05D002685 ORTHO05D001487 3.0e-24 116.7 67 92.5
Lalb_Chr10g0092001 Lupinus albus HOM05D002685 ORTHO05D001487 8.0e-22 108.6 282 34.8
Glyma.18G284900 Glycine max HOM05D002685 ORTHO05D001487 7.8e-17 92.0 303 35.0
VMungo1383G1702 Vigna mungo HOM05D002685 ORTHO05D001487 7.8e-17 92.0 290 34.1
Glyma.02G096400 Glycine max HOM05D002685 ORTHO05D001487 7.3e-15 85.5 302 46.0
Glyma.18G285100 Glycine max HOM05D002685 ORTHO05D001487 7.3e-15 85.5 316 42.4
CSS0035629 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 8.1e-14 82.0 289 28.0
CsaV3_4G002950 Cucumis sativus L. HOM05D002685 ORTHO05D001487 6.8e-13 79.0 301 28.9
Phvul.008G016500 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 8.9e-13 78.6 283 37.8
Phvul.008G016600 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 8.9e-13 78.6 280 28.9
CAN.G65.93 Capsicum annuum HOM05D002685 ORTHO05D001487 1.2e-12 78.2 281 35.9
Haze_12458 Corylus avellana HOM05D002685 ORTHO05D001487 1.2e-12 78.2 327 27.8
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 2.0e-12 77.4 302 28.8
arahy.Tifrunner.gnm1.ann1.D7MIWJ Arachis hypogaea HOM05D002685 ORTHO05D001487 4.4e-12 76.3 289 47.1
arahy.Tifrunner.gnm1.ann1.G65IU1 Arachis hypogaea HOM05D002685 ORTHO05D001487 4.4e-12 76.3 289 47.1
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 4.4e-12 76.3 290 26.9
Cpa.g.sc96.31 Carica papaya HOM05D002685 ORTHO05D001487 7.5e-12 75.5 351 28.5
Cfa009398 Carpinus fangiana HOM05D002685 ORTHO05D001487 2.2e-11 73.9 319 29.2
Nitab4.5_0000337g0100 Nicotiana tabacum HOM05D002685 ORTHO05D001487 2.9e-11 73.6 277 35.0
Prupe.1G221500 Prunus persica HOM05D002685 ORTHO05D001487 3.7e-11 73.2 298 27.2
Nitab4.5_0003251g0040 Nicotiana tabacum HOM05D002685 ORTHO05D001487 6.4e-11 72.4 280 34.6
MELO3C017749.2 Cucumis melo HOM05D002685 ORTHO05D001487 1.1e-10 71.6 303 28.1
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.9e-10 70.9 273 33.7
Sabra03G0122800 Salix brachista HOM05D002685 ORTHO05D001487 1.9e-10 70.9 346 26.0
DCAR_024650 Daucus carota HOM05D002685 ORTHO05D001487 2.4e-10 70.5 95 45.3
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 4.1e-10 69.7 272 26.8
SalBow2G0376 Salvia bowleyana HOM05D002685 ORTHO05D001487 4.1e-10 69.7 274 28.5
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 4.1e-10 69.7 295 27.5
PGSC0003DMG400041029 Solanum tuberosum HOM05D002685 ORTHO05D001487 5.4e-10 69.3 285 36.1
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 7.1e-10 68.9 273 33.3
SalBow2G0840 Salvia bowleyana HOM05D002685 ORTHO05D001487 7.1e-10 68.9 274 28.1
Cc09_g08480 Coffea canephora HOM05D002685 ORTHO05D001487 1.6e-09 67.8 279 34.1
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 2.1e-09 67.4 356 25.3
QL03p029584 Quercus lobata HOM05D002685 ORTHO05D001487 2.7e-09 67.0 75 50.7
THA.LOC104801613 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 6.0e-09 65.9 262 29.0
Nn8g41102 Nelumbo nucifera HOM05D002685 ORTHO05D001487 7.8e-09 65.5 301 24.6
Nitab4.5_0004556g0030 Nicotiana tabacum HOM05D002685 ORTHO05D001487 7.8e-09 65.5 277 31.4
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 1.3e-08 64.7 279 27.6
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 1.3e-08 64.7 105 43.8
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 2.3e-08 63.9 73 49.3
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 2.3e-08 63.9 279 48.0
Potri.003G167500 Populus trichocarpa HOM05D002685 ORTHO05D001487 3.0e-08 63.5 103 42.7
vmacro01042 Vaccinium macrocarpon HOM05D002685 ORTHO05D001487 3.0e-08 63.5 341 26.1
Sopen06g028800 Solanum pennellii HOM05D002685 ORTHO05D001487 3.9e-08 63.2 284 29.2
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 5.1e-08 62.8 279 33.0
Lsat_1_v5_gn_4_2061 Lactuca sativa HOM05D002685 ORTHO05D001487 6.6e-08 62.4 271 25.8
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 8.6e-08 62.0 122 30.3
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 8.6e-08 62.0 278 34.5
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 8.6e-08 62.0 281 32.4
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 1.1e-07 61.6 76 43.4
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 1.5e-07 61.2 285 27.4
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 2.5e-07 60.5 78 43.6
Solyc06g072430.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 2.5e-07 60.5 284 30.3
QL05p082393 Quercus lobata HOM05D002685 ORTHO05D001487 5.6e-07 59.3 75 45.3
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 7.3e-07 58.9 302 26.2
Lj1C600G7 Lonicera japonica HOM05D002685 ORTHO05D001487 7.3e-07 58.9 78 42.3
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 9.5e-07 58.5 284 26.1
RcHm_v2.0_Chr4g0429621 Rosa chinensis HOM05D002685 ORTHO05D001487 9.5e-07 58.5 73 43.8
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 1.2e-06 58.2 280 31.1
Ciclev10031823m.g Citrus clementina HOM05D002685 ORTHO05D001487 2.1e-06 57.4 304 38.2
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.1e-06 57.4 78 39.7
CiPaw.05G105900 Carya illinoinensis HOM05D002685 ORTHO05D001487 2.8e-06 57.0 75 42.7
AUR62028890 Chenopodium quinoa HOM05D002685 ORTHO05D001487 2.8e-06 57.0 95 36.8
Manes.13G007700 Manihot esculenta HOM05D002685 ORTHO05D001487 2.8e-06 57.0 287 31.7
PGR119G2530 Punica granatum HOM05D002685 ORTHO05D001487 3.6e-06 56.6 344 25.3
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 3.6e-06 56.6 89 40.4
Dinv11706 Davidia involucrata HOM05D002685 ORTHO05D001487 6.2e-06 55.8 113 33.6
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 8.1e-06 55.5 96 37.5
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 8.1e-06 55.5 75 41.3
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 8.1e-06 55.5 86 38.4
Solyc10g084170.1 Solanum lycopersicum HOM05D002685 ORTHO05D001487 8.1e-06 55.5 78 41.0


User provided reference genes

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