Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2738.4 1383 100.0
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2669.4 1383 97.4
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2663.3 1383 97.0
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2660.9 1385 97.2
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2587.4 1385 94.0
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2577.7 1390 93.0
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2561.6 1390 92.7
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2506.9 1481 86.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2502.6 1391 90.3
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2446.8 1484 84.8
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2370.9 1390 84.6
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2346.2 1388 84.1
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2343.9 1388 83.6
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2343.5 1390 83.9
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2327.4 1391 83.5
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2322.7 1390 83.2
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2321.6 1391 83.0
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2320.8 1391 83.5
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2318.5 1390 83.3
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2318.1 1392 82.8
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2318.1 1390 83.3
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2312.0 1392 82.6
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2311.6 1391 82.9
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2303.9 1391 82.5
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2302.7 1392 82.4
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2298.1 1391 82.2
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2296.9 1390 82.0
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2296.9 1396 82.1
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2295.4 1389 82.5
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2290.0 1392 81.8
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2281.9 1389 82.3
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2281.5 1391 82.2
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2273.4 1390 80.3
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2263.8 1390 80.9
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2263.8 1390 80.5
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2262.6 1383 80.7
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2255.7 1390 80.5
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2253.0 1337 83.2
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2249.9 1435 79.9
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2243.4 1402 79.7
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2237.2 1407 80.3
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2231.4 1384 80.7
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2230.7 1391 80.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2228.4 1390 79.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2210.3 1388 78.5
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2206.4 1388 78.4
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2195.6 1427 77.6
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2195.2 1385 79.9
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2194.9 1391 78.9
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2190.2 1385 79.1
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1395 78.9
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2188.3 1381 79.4
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2183.3 1386 78.1
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2181.4 1388 78.6
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2179.8 1387 77.6
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2174.1 1386 78.6
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2171.7 1409 77.1
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2170.2 1399 77.0
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2168.7 1410 77.1
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2164.8 1409 76.8
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2164.0 1401 76.5
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2161.3 1405 77.4
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2161.3 1404 77.2
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2161.3 1409 76.7
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2160.2 1419 76.1
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2159.0 1405 77.2
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2157.1 1405 77.0
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2157.1 1405 77.0
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2150.6 1397 76.4
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2147.9 1399 76.7
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2132.8 1373 77.6
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2127.8 1415 76.2
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2124.7 1391 76.1
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2108.6 1254 83.5
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2051.9 1414 74.6
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2030.4 1225 82.0
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2012.3 1700 63.2
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1985.3 1352 74.0
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1978.8 1352 73.8
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1964.5 1352 73.6
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1956.8 1304 75.4
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1917.9 1448 68.5
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1900.9 1186 79.1
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1898.2 1371 69.8
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1897.5 1333 71.1
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1889.8 1379 71.0
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1854.7 1374 68.4
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1844.7 1394 67.2
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1739.2 1532 60.7
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1489.2 1158 64.6
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1448.7 928 76.5
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1412.1 1404 52.7
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1406.0 823 84.2
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1364.4 761 90.5
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1357.0 1389 50.0
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1354.7 974 71.9
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1345.1 1410 49.0
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1338.6 1329 51.4
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1224.5 719 84.7
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1186.0 816 72.8
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1164.1 875 66.3
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1130.5 792 72.2
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1113.6 588 94.6
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 7.7e-280 968.0 817 58.6
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.9e-246 857.1 595 73.8
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 6.2e-213 745.7 516 73.1
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.0e-207 728.4 486 75.7
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.7e-194 684.5 540 63.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 6.5e-186 656.0 1485 29.8
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.1e-156 558.9 525 58.7
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.0e-154 552.4 529 62.0
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.7e-147 527.7 368 71.5
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.5e-137 495.4 528 50.2
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 9.5e-121 439.5 408 61.5
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.0e-118 431.8 269 81.8
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 2.3e-106 391.7 215 89.8
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.2e-86 326.2 203 78.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 2.2e-64 252.3 299 47.5
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 5.3e-63 247.7 133 92.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.0e-63 247.3 145 82.1
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.1e-44 186.8 128 68.8
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.8e-35 155.6 133 61.7
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 3.6e-35 155.2 116 69.0
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.3e-34 152.5 89 76.4
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-33 149.4 156 51.3
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.4e-31 143.3 112 65.2
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 2.4e-31 142.5 94 75.5
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 1.6e-30 139.8 84 82.1
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.0e-29 137.1 83 78.3
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 2.3e-29 136.0 89 73.0
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 8.6e-29 134.0 98 71.4
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 8.0e-27 127.5 110 57.3
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.3e-24 120.2 150 52.0
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.1e-23 115.2 171 39.2
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 5.4e-23 114.8 86 65.1
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 9.2e-23 114.0 119 57.1
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 6.6e-21 107.8 239 34.7
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.1e-20 107.1 98 54.1
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 7.3e-20 104.4 124 47.6
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 4.0e-18 98.6 100 56.0
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 2.9e-16 92.4 50 88.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 2.9e-16 92.4 50 88.0
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.9e-16 92.4 51 86.3
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 4.9e-16 91.7 128 46.9
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.1e-15 88.6 50 90.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.2e-11 77.0 45 82.2
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 1.4e-10 73.6 42 85.7
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 5.2e-10 71.6 49 77.6
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 35 88.6
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 9.2e-07 60.8 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.6e-06 60.1 34 85.3


User provided reference genes

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