Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 1.1e-93 346.7 183 100.0
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 3.4e-82 308.5 183 87.4
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 6.6e-78 294.3 177 85.9
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 5.2e-75 284.6 179 82.1
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 6.8e-75 284.3 179 82.1
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 3.7e-73 278.5 179 81.0
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 3.5e-71 271.9 182 76.9
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 5.0e-70 268.1 180 77.2
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 6.6e-70 267.7 175 79.4
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 8.6e-70 267.3 177 75.7
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 1.1e-67 260.4 176 75.6
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.1e-67 260.4 179 72.6
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 2.3e-67 259.2 170 75.3
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 3.1e-67 258.8 178 71.9
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 2.2e-65 252.7 180 70.6
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 2.9e-65 252.3 178 71.9
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 2.4e-64 249.2 177 68.4
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 3.2e-64 248.8 177 68.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 5.4e-64 248.1 174 70.1
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 5.4e-64 248.1 177 70.1
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.0e-63 246.1 170 71.2
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 2.7e-63 245.7 173 71.7
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 4.6e-63 245.0 173 71.7
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 7.8e-63 244.2 172 70.3
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.0e-62 243.8 173 71.1
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.7e-62 243.0 176 68.8
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.7e-62 243.0 174 69.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 3.0e-62 242.3 177 68.9
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 3.0e-62 242.3 180 67.8
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 3.0e-62 242.3 176 67.6
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 5.0e-62 241.5 176 69.3
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 6.6e-62 241.1 179 69.3
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 8.6e-62 240.7 182 65.9
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 8.6e-62 240.7 176 66.5
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.1e-61 240.4 179 67.6
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.5e-61 240.0 180 66.1
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 1.9e-61 239.6 179 68.7
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 2.5e-61 239.2 179 66.5
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 2.5e-61 239.2 177 65.0
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 7.3e-61 237.7 170 68.8
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 9.5e-61 237.3 173 67.1
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 1.6e-60 236.5 178 66.9
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 2.8e-60 235.7 176 67.6
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 2.8e-60 235.7 179 67.0
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 4.7e-60 235.0 173 67.6
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.7e-60 235.0 190 63.7
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 4.7e-60 235.0 185 65.9
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 8.1e-60 234.2 167 70.7
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 1.1e-59 233.8 177 64.4
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 1.4e-59 233.4 176 68.2
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 3.1e-59 232.3 175 67.4
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 3.1e-59 232.3 179 65.4
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 5.2e-59 231.5 177 66.1
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 8.9e-59 230.7 179 69.3
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 1.5e-58 229.9 177 66.1
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.3e-57 226.9 173 64.2
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 1.7e-57 226.5 177 65.5
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.7e-57 226.5 177 65.5
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 1.7e-57 226.5 170 65.9
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.7e-57 226.5 176 64.2
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 4.9e-57 224.9 170 62.9
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 6.4e-57 224.6 171 65.5
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 6.4e-57 224.6 169 65.7
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 1.1e-56 223.8 178 65.7
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 1.1e-56 223.8 178 65.7
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 1.9e-56 223.0 176 64.8
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 2.4e-56 222.6 173 62.4
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 4.1e-56 221.9 178 65.2
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 4.1e-56 221.9 178 65.2
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 7.1e-56 221.1 174 62.6
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 1.2e-55 220.3 253 51.8
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.2e-55 220.3 175 62.9
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 6.0e-55 218.0 143 76.9
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 7.8e-55 217.6 177 63.3
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 3.9e-54 215.3 177 62.1
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 8.6e-54 214.2 142 77.5
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 8.6e-54 214.2 165 67.3
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 3.3e-53 212.2 168 67.3
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 9.5e-53 210.7 167 66.5
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.2e-52 210.3 207 54.6
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 2.1e-52 209.5 166 66.3
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 2.8e-52 209.1 172 60.5
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 6.2e-52 208.0 177 62.1
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.1e-51 207.2 166 62.7
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.4e-50 201.8 150 68.7
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 2.9e-49 199.1 152 63.8
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.9e-49 199.1 151 67.5
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 4.9e-49 198.4 171 56.1
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 1.2e-47 193.7 136 66.9
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 7.8e-47 191.0 136 69.9
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 5.1e-46 188.3 138 71.7
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 8.7e-46 187.6 178 56.2
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 4.3e-45 185.3 195 53.3
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 6.9e-43 177.9 121 72.7
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 3.4e-42 175.6 138 65.2
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 6.4e-41 171.4 180 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 1.1e-40 170.6 170 48.8
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 7.1e-40 167.9 171 48.0
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 2.1e-39 166.4 119 69.7
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 1.5e-37 160.2 120 64.2
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 7.3e-37 157.9 143 55.2
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 3.1e-35 152.5 140 59.3
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 5.4e-32 141.7 118 61.9
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 7.4e-29 131.3 160 41.2
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 8.2e-20 101.3 85 56.5
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 1.9e-16 90.1 64 71.9
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.5e-13 80.5 66 62.1
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.6e-12 77.0 151 30.5
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 6.3e-12 75.1 59 71.2
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 1.2e-10 70.9 72 58.3
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 2.0e-10 70.1 42 76.2


User provided reference genes

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