Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 2250.7 1159 100.0
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2196.0 1159 96.7
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 2178.3 1160 96.6
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 2112.4 1162 93.7
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2108.2 1162 93.5
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 2103.9 1160 92.4
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 2102.4 1160 93.6
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 2089.3 1160 92.1
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2072.4 1161 91.8
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2071.6 1165 91.7
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2068.1 1172 91.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2026.5 1168 87.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2020.0 1174 87.6
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 2016.5 1164 88.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2016.1 1173 87.8
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2014.2 1169 87.8
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 2013.4 1168 87.9
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 2001.1 1174 87.0
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1999.9 1167 87.6
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1999.9 1169 86.9
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1998.0 1168 87.3
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1994.5 1166 87.0
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1994.2 1161 86.3
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1993.8 1161 87.4
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1991.1 1166 87.1
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1989.9 1167 87.1
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1988.4 1160 87.3
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1982.2 1173 86.1
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1979.1 1165 86.4
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1978.8 1175 86.4
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1977.2 1167 86.5
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1976.8 1165 86.4
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1975.3 1167 86.1
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1974.9 1165 86.5
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1969.9 1171 85.8
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1176 85.8
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1167 86.1
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1964.9 1173 85.5
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1963.7 1173 85.5
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1961.8 1166 85.2
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1961.4 1173 85.5
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1174 84.8
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1956.8 1169 85.6
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1956.8 1170 85.0
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1954.9 1168 85.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1952.9 1176 85.0
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1952.6 1169 84.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1947.9 1204 83.1
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1940.6 1166 84.6
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1940.2 1166 84.8
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1937.9 1198 83.6
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1936.4 1177 84.3
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1936.0 1170 83.5
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1933.3 1165 84.8
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1211 82.1
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1931.0 1163 84.8
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1921.4 1172 83.6
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1920.6 1169 84.0
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1920.6 1091 88.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1920.2 1175 83.1
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1917.1 1165 83.8
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1916.7 1165 83.7
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1916.7 1169 83.5
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1174 83.6
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1178 82.9
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1914.0 1165 85.0
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1914.0 1167 83.8
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1911.7 1173 83.2
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1911.0 1163 83.4
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1911.0 1175 83.2
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1167 83.1
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1167 83.1
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1163 83.8
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1905.2 1173 82.9
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1905.2 1163 83.2
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1899.4 1169 83.1
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1895.9 1184 81.9
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1893.2 1163 82.6
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1885.5 1168 82.1
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1885.2 1210 80.2
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1882.5 1152 83.9
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1880.9 1159 81.2
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1879.0 1166 82.2
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1871.3 1099 84.7
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1867.8 1170 82.3
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1847.8 1101 83.7
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1843.2 1176 81.1
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1829.3 1195 80.2
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1817.0 1328 73.2
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1801.2 1159 77.3
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1777.7 1172 77.3
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1768.8 1169 75.7
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1760.7 936 96.8
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1732.2 1148 77.5
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1725.3 1158 75.5
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1693.7 1169 73.2
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1642.5 1161 71.4
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1622.4 1003 81.7
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1620.5 1152 75.5
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1620.5 1162 70.8
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1458.4 848 87.3
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1442.9 1154 63.5
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1435.2 1155 64.2
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1407.1 839 84.5
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1399.4 1153 62.8
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1391.7 1154 62.5
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1363.6 1171 60.8
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1348.6 799 84.7
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1268.4 799 79.6
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1226.5 782 79.3
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1110.9 696 81.9
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1103.2 913 61.3
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 5.8e-305 1051.2 1189 46.4
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 7.3e-300 1034.2 648 80.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 4.6e-286 988.4 577 87.9
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.1e-284 983.8 743 70.5
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.9e-284 983.0 593 82.5
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.0e-277 959.1 547 89.8
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.4e-274 949.5 599 81.8
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.8e-258 896.7 627 73.0
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.8e-258 896.7 520 83.3
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.6e-217 760.8 466 83.0
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 6.6e-216 755.4 465 80.0
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 7.1e-210 735.3 445 85.4
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 6.3e-166 589.3 358 87.4
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 6.3e-158 562.8 354 82.8
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 9.5e-114 416.0 273 76.2
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.3e-112 411.4 379 55.4
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 8.4e-86 323.2 195 82.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 6.9e-64 250.4 168 80.4
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 3.6e-44 184.9 144 69.4
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 4.6e-44 184.5 117 84.6
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 9.1e-40 170.2 103 85.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 5.9e-39 167.5 109 80.7
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.6e-36 159.5 87 87.4
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 3.6e-36 158.3 78 94.9
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.3e-33 149.8 96 82.3
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.8e-17 95.5 74 63.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 6.3e-17 94.4 91 72.5
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 6.3e-17 94.4 84 64.3
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.3e-17 94.4 74 62.2
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 7.7e-15 87.4 51 78.4
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.2e-14 85.9 51 76.5
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.9e-14 85.5 51 78.4
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 5.9e-07 61.2 338 26.6
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 1.7e-06 59.7 57 54.4


User provided reference genes

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