Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.7e-82 308.5 147 100.0
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 7.1e-75 283.9 146 93.8
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.6e-74 282.7 145 93.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 2.1e-74 282.3 145 93.1
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.5e-72 276.2 144 89.6
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 3.2e-67 258.5 148 82.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 9.3e-67 256.9 148 82.4
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.2e-66 256.5 141 83.7
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 3.9e-65 251.5 144 79.9
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.1e-62 241.9 144 76.4
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 5.3e-62 241.1 144 78.5
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 6.9e-62 240.7 147 77.6
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 7.6e-61 237.3 148 73.6
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.2e-60 235.7 133 79.7
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.2e-59 231.5 133 78.9
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.6e-58 229.6 147 73.5
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.1e-58 229.2 132 78.0
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 3.6e-58 228.4 141 75.2
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 3.6e-58 228.4 133 75.9
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.8e-57 226.1 140 75.7
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 3.0e-57 225.3 141 73.8
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 5.1e-57 224.6 144 72.9
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.5e-56 222.2 136 69.9
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 5.7e-56 221.1 142 71.8
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.3e-55 219.9 148 68.9
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.3e-55 219.9 136 69.9
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.7e-55 219.5 148 70.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.8e-55 218.8 136 69.9
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 4.8e-55 218.0 131 74.8
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.8e-55 218.0 142 66.9
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.3e-55 217.6 147 68.7
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 8.2e-55 217.2 148 68.2
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 8.2e-55 217.2 131 74.0
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.2e-55 217.2 144 68.8
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.4e-54 216.5 132 73.5
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.8e-54 216.1 123 79.7
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.8e-54 216.1 141 70.9
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.8e-54 216.1 141 70.9
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 3.1e-54 215.3 130 73.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.1e-54 215.3 131 73.3
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 4.1e-54 214.9 135 71.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 5.3e-54 214.5 135 71.9
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 5.3e-54 214.5 131 73.3
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.3e-54 214.5 141 70.2
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 6.9e-54 214.2 144 67.4
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-53 213.0 141 68.8
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 2.0e-53 212.6 142 66.2
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 2.0e-53 212.6 140 69.3
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.0e-53 212.6 148 66.2
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.0e-53 212.6 144 66.7
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 3.4e-53 211.8 141 66.0
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.4e-53 211.8 132 70.5
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 4.5e-53 211.5 141 66.7
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 7.7e-53 210.7 147 66.0
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.3e-52 209.9 141 70.2
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.3e-52 209.9 132 71.2
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.3e-52 209.9 142 66.2
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.7e-52 209.5 140 67.9
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.9e-52 208.8 129 73.6
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.5e-52 207.6 129 73.6
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.5e-52 207.2 129 72.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.1e-51 206.8 136 66.9
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.4e-51 206.5 129 72.9
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.4e-51 206.5 150 64.0
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.9e-51 206.1 130 71.5
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 3.2e-51 205.3 138 65.2
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.2e-51 205.3 135 68.1
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 3.2e-51 205.3 136 66.2
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.2e-51 205.3 135 68.1
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.2e-51 205.3 135 68.1
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 4.2e-51 204.9 136 66.2
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.2e-51 204.9 142 68.3
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 5.5e-51 204.5 131 68.7
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.2e-50 203.4 139 67.6
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.6e-50 203.0 138 68.1
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.1e-50 202.6 138 67.4
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.7e-50 202.2 158 59.5
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 3.6e-50 201.8 135 65.9
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.6e-50 201.8 138 68.1
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 3.6e-50 201.8 138 68.1
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 4.7e-50 201.4 114 79.8
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 6.1e-50 201.1 136 65.4
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 6.1e-50 201.1 136 65.4
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 6.1e-50 201.1 136 65.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.0e-49 200.3 142 66.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.3e-49 199.1 142 65.5
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 3.0e-49 198.7 142 62.7
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 3.0e-49 198.7 142 65.5
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 8.8e-49 197.2 123 71.5
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.6e-48 195.7 142 62.7
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 7.4e-48 194.1 140 62.1
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 2.2e-47 192.6 132 66.7
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 4.8e-47 191.4 130 66.9
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 6.3e-47 191.0 212 49.5
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 6.3e-47 191.0 148 62.8
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 5.3e-46 188.0 127 67.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 5.9e-45 184.5 141 61.0
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 7.7e-45 184.1 132 62.9
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 7.7e-45 184.1 132 62.9
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.0e-44 183.7 133 63.9
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.7e-44 183.0 133 60.9
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 2.2e-44 182.6 139 61.9
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.8e-44 181.8 140 57.9
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 6.5e-44 181.0 130 65.4
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 5.5e-43 177.9 139 61.9
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 5.5e-43 177.9 140 60.7
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 3.6e-42 175.3 122 62.3
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 3.3e-40 168.7 127 58.3
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 2.8e-39 165.6 137 56.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 5.3e-38 161.4 213 40.4
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.6e-37 159.1 145 53.8
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 4.5e-37 158.3 142 50.0
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.8e-36 155.2 142 48.6
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.1e-35 153.7 134 50.7
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 3.2e-35 152.1 136 55.9
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 3.0e-33 145.6 138 52.2
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 6.7e-33 144.4 84 76.2
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 3.7e-31 138.7 136 50.7
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.4e-30 136.0 82 74.4
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 9.4e-27 124.0 81 70.4
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-26 123.6 119 50.4
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.6e-26 123.2 89 64.0
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-26 123.2 119 50.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 3.6e-26 122.1 118 49.2
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.0e-25 120.6 86 62.8
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.0e-25 120.6 144 43.1
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 3.0e-25 119.0 131 42.0
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 4.0e-25 118.6 132 41.7
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 8.8e-25 117.5 132 40.9
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.5e-24 116.7 82 63.4
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 5.7e-24 114.8 131 42.7
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 8.3e-23 110.9 114 49.1
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 3.1e-22 109.0 54 90.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.1e-22 108.6 137 40.9
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 9.1e-22 107.5 95 53.7
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.5e-21 105.1 137 41.6
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 4.2e-19 98.6 86 52.3
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.2e-18 97.1 183 31.1
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 5.0e-12 75.1 106 35.8
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 7.3e-11 71.2 72 47.2
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.8e-10 69.3 55 60.0
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.0e-09 67.4 56 53.6
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 8.3e-07 57.8 38 63.2


User provided reference genes

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