Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 6.3e-199 697.2 344 100.0
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 6.6e-164 580.9 339 85.5
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 6.6e-140 501.1 344 75.9
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 2.0e-136 489.6 347 72.3
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 2.9e-135 485.7 344 72.4
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 9.3e-134 480.7 345 72.2
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 9.6e-131 470.7 348 69.5
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 2.8e-130 469.2 348 68.7
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 2.6e-128 462.6 345 69.6
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 8.7e-124 447.6 384 62.5
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 4.3e-123 445.3 283 72.4
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 9.6e-123 444.1 345 66.4
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 2.8e-122 442.6 282 73.4
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.8e-122 442.6 333 67.9
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.8e-122 442.6 333 67.9
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.8e-122 442.6 277 76.5
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 3.7e-122 442.2 335 64.2
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 1.4e-121 440.3 350 65.4
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.4e-121 439.5 277 75.8
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 3.1e-121 439.1 326 68.7
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 4.1e-121 438.7 342 64.0
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 6.9e-121 438.0 280 74.6
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.5e-120 436.8 321 67.0
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 2.6e-120 436.0 283 73.9
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 7.6e-120 434.5 335 64.5
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 1.0e-119 434.1 275 75.6
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 1.7e-119 433.3 341 65.4
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 2.2e-119 433.0 345 64.6
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 3.8e-119 432.2 344 65.4
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 3.8e-119 432.2 327 67.0
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 8.4e-119 431.0 290 72.8
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 4.2e-118 428.7 281 71.9
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 2.7e-117 426.0 336 64.3
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 7.9e-117 424.5 278 73.4
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 1.0e-116 424.1 336 65.2
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 1.8e-116 423.3 265 72.8
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 1.8e-116 423.3 315 65.1
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 2.5e-115 419.5 310 66.8
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 9.7e-115 417.5 277 70.0
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 1.6e-114 416.8 369 60.7
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 2.2e-114 416.4 277 71.1
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 6.3e-114 414.8 280 70.0
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 1.4e-113 413.7 421 53.4
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 2.4e-113 412.9 277 70.4
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 4.1e-113 412.1 276 69.9
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 9.0e-113 411.0 302 65.2
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 9.0e-113 411.0 279 72.4
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 9.0e-113 411.0 277 71.1
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.2e-112 410.6 347 61.1
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 1.5e-112 410.2 325 61.5
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 1.5e-112 410.2 325 61.5
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 2.6e-112 409.5 306 65.4
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 2.6e-112 409.5 306 65.4
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 3.4e-112 409.1 257 73.2
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 1.7e-111 406.8 285 70.5
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 3.8e-111 405.6 280 69.6
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 5.0e-111 405.2 282 67.4
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 1.4e-110 403.7 280 69.6
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 9.4e-110 401.0 346 59.2
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 1.6e-109 400.2 260 71.9
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 4.6e-109 398.7 307 64.5
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 1.0e-108 397.5 259 70.7
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 3.9e-108 395.6 344 59.9
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 6.7e-108 394.8 254 68.9
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 5.7e-107 391.7 257 69.3
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 7.4e-107 391.3 335 60.6
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 2.2e-106 389.8 225 80.4
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 9.1e-105 384.4 269 70.6
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 3.4e-104 382.5 258 71.3
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 3.4e-104 382.5 247 71.3
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 1.7e-103 380.2 384 53.9
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 2.2e-103 379.8 248 69.0
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 2.9e-103 379.4 354 57.3
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 3.8e-103 379.0 225 76.0
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 6.5e-103 378.3 249 67.9
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 8.5e-103 377.9 361 55.1
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 1.6e-101 373.6 251 66.9
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 6.1e-101 371.7 213 83.1
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 1.0e-100 370.9 254 71.3
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 7.0e-97 358.2 260 65.0
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 3.2e-94 349.4 325 56.6
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 6.1e-93 345.1 315 55.2
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 3.2e-86 322.8 344 51.5
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 1.2e-85 320.9 257 60.3
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 6.8e-84 315.1 281 56.6
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 6.8e-84 315.1 282 54.6
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 4.4e-83 312.4 197 70.6
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 2.4e-81 306.6 181 75.7
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 3.1e-81 306.2 164 85.4
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 4.1e-81 305.8 230 61.3
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 4.1e-81 305.8 230 61.3
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 2.7e-80 303.1 228 61.4
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 7.7e-80 301.6 181 74.0
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 5.0e-79 298.9 282 51.1
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 8.5e-79 298.1 195 69.7
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 4.0e-76 289.3 252 59.5
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 1.7e-74 283.9 180 73.9
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 3.3e-70 269.6 194 71.1
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 7.3e-70 268.5 251 51.0
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 9.5e-70 268.1 190 65.8
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 4.7e-69 265.8 167 71.3
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.2e-61 241.1 282 46.8
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.2e-61 241.1 282 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 1.8e-60 237.3 241 49.0
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 2.7e-56 223.4 338 40.2
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 1.5e-51 207.6 209 54.5
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.3e-47 193.7 130 68.5
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 5.6e-46 189.1 130 67.7
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.2e-40 171.4 130 64.6
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 7.8e-40 168.7 245 39.2
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 1.5e-30 137.9 126 54.0
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 5.6e-30 136.0 251 35.9
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 9.6e-30 135.2 91 68.1
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 3.8e-26 123.2 258 33.3
Psat2g101840 Pisum sativum HOM05D006863 ORTHO05D044797 7.1e-25 119.0 76 80.3
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.3e-22 110.2 138 50.0
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 6.9e-20 102.4 266 30.1
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 1.5e-19 101.3 70 64.3
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 1.3e-13 81.6 119 48.7


User provided reference genes

Program Settings