Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 6.8e-238 827.0 442 100.0
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 2.1e-194 682.6 409 85.6
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 7.9e-178 627.5 411 78.3
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 1.6e-170 603.2 411 76.6
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.6e-162 576.6 388 77.6
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.2e-144 517.3 412 64.6
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 3.4e-144 515.8 410 64.6
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 4.4e-128 462.2 417 58.8
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 9.8e-128 461.1 417 59.2
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.7e-127 460.3 417 59.0
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 6.8e-121 438.3 411 56.2
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 2.3e-116 423.3 417 55.2
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 5.0e-116 422.2 429 53.6
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 3.6e-114 416.0 426 53.5
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.2e-112 411.0 422 53.6
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.5e-112 410.6 427 53.9
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 9.8e-112 407.9 424 51.7
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 9.2e-110 401.4 424 51.4
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 9.5e-107 391.3 424 50.9
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.4e-105 387.5 411 51.6
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 2.0e-104 383.6 436 50.0
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 2.0e-104 383.6 424 49.8
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 3.4e-104 382.9 425 49.9
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 1.6e-101 374.0 412 50.0
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 6.6e-100 368.6 421 49.2
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.1e-97 361.3 425 47.8
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.4e-97 360.1 424 45.8
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 3.4e-96 356.3 421 46.6
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 4.4e-96 355.9 422 47.4
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 5.8e-96 355.5 412 49.0
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 9.9e-96 354.8 416 45.9
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.3e-95 354.4 422 46.9
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.7e-95 354.0 425 46.1
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 2.9e-95 353.2 429 46.4
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.9e-94 350.5 426 46.7
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.1e-94 348.6 421 47.5
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.6e-93 347.4 421 47.3
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.3e-92 344.4 431 48.7
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.7e-92 344.0 416 45.4
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-92 344.0 417 47.2
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 3.9e-92 342.8 373 50.9
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 3.9e-92 342.8 418 44.7
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.7e-92 341.7 418 45.9
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.1e-91 341.3 411 46.5
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 5.6e-91 339.0 428 44.9
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 9.6e-91 338.2 421 45.6
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 9.6e-91 338.2 427 45.7
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.3e-90 337.8 416 45.7
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.3e-90 337.8 423 46.3
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 1.6e-90 337.4 419 44.4
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.1e-90 337.0 411 46.0
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 2.8e-90 336.7 428 44.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 8.1e-90 335.1 394 50.0
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 8.1e-90 335.1 390 49.5
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.4e-89 334.3 432 47.0
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.8e-89 334.0 408 46.3
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 4.0e-89 332.8 389 48.6
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.0e-89 332.8 408 46.3
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.6e-88 330.1 425 45.6
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 5.8e-88 328.9 429 45.5
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.6e-88 328.6 411 45.5
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.3e-87 327.8 392 48.0
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.7e-87 327.4 392 48.0
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.2e-87 327.0 423 43.7
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 6.4e-87 325.5 428 44.2
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 6.4e-87 325.5 413 46.7
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.1e-86 324.7 409 45.5
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.1e-86 324.7 411 44.8
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.6e-85 320.9 409 45.2
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.7e-85 320.1 392 47.2
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-84 317.8 400 47.5
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 3.0e-84 316.6 375 45.3
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 6.6e-84 315.5 463 41.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.9e-83 313.9 392 44.6
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 4.3e-83 312.8 426 41.5
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 5.6e-83 312.4 407 43.7
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.6e-82 309.7 416 44.5
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 6.2e-82 308.9 407 45.5
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 6.2e-82 308.9 418 41.9
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 6.2e-82 308.9 367 46.3
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.8e-81 307.4 407 43.5
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 2.4e-81 307.0 427 41.0
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 6.9e-81 305.4 422 41.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.5e-80 302.8 415 42.2
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 1.7e-79 300.8 415 41.0
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 2.9e-79 300.1 408 44.6
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.9e-79 299.3 413 44.1
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.4e-78 297.7 358 46.6
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 2.1e-77 293.9 401 41.6
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.8e-76 290.8 463 40.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 2.3e-76 290.4 413 41.2
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 3.0e-76 290.0 466 40.6
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 5.1e-76 289.3 425 40.5
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 5.1e-76 289.3 420 41.0
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 8.7e-76 288.5 430 40.5
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 8.7e-76 288.5 430 40.5
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.9e-75 287.3 387 43.7
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.5e-75 287.0 408 43.9
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 9.0e-73 278.5 425 39.1
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.5e-72 277.7 292 51.7
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.6e-72 276.9 416 39.9
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 8.4e-71 271.9 410 39.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.2e-69 268.1 418 39.2
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 1.1e-67 261.5 393 39.7
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.1e-65 253.4 363 40.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 3.5e-61 240.0 403 37.7
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 5.3e-57 226.1 366 39.1
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.1e-53 212.6 426 35.2
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 8.8e-52 208.8 426 34.7
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 4.1e-49 199.9 330 40.0
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 5.3e-49 199.5 371 33.7
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 6.5e-47 192.6 210 49.5
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.4e-46 191.4 344 35.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 7.9e-45 185.7 382 32.2
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 1.5e-40 171.4 375 32.0
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 3.6e-37 160.2 206 44.2
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 4.7e-37 159.8 318 31.1
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.8e-36 157.9 188 47.9
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.1e-35 155.2 424 30.0
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.3e-34 151.8 251 40.2
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 2.2e-34 151.0 71 98.6
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.4e-33 148.3 454 28.4
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.6e-32 144.8 156 49.4
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 5.0e-31 139.8 395 29.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.4e-28 131.7 427 28.8
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 1.3e-26 125.2 434 25.6
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 1.7e-26 124.8 58 98.3
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 8.3e-26 122.5 469 26.2
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.8e-25 121.3 146 45.9
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.0e-24 117.9 352 26.1
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 2.6e-19 100.9 88 64.8
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 7.5e-19 99.4 439 25.7
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.0e-15 89.0 212 29.2
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 2.3e-15 87.8 56 71.4
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.8e-15 87.0 289 27.3
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.1e-13 81.3 207 28.0
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.4e-10 69.7 59 59.3
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-09 68.2 239 25.1
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.5e-08 63.9 224 26.8
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.3e-07 61.2 94 39.4


User provided reference genes

Program Settings