Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38209 Trifolium pratense HOM05D003488 ORTHO05D004214 4.6e-49 197.6 101 100.0
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 2.8e-30 135.2 94 77.7
arahy.Tifrunner.gnm1.ann1.D6PK9F Arachis hypogaea HOM05D003488 ORTHO05D004214 2.8e-30 135.2 94 77.7
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 2.8e-30 135.2 94 77.7
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 8.2e-30 133.7 94 77.7
Glyma.11G183600 Glycine max HOM05D003488 ORTHO05D004214 8.2e-30 133.7 94 77.7
Glyma.12G088900 Glycine max HOM05D003488 ORTHO05D004214 8.2e-30 133.7 94 76.6
Psat0s2993g0200 Pisum sativum HOM05D003488 ORTHO05D004214 8.2e-30 133.7 94 77.7
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 1.1e-29 133.3 94 76.6
TPR.G17200 Trifolium pratense HOM05D003488 ORTHO05D004214 1.1e-29 133.3 94 75.5
VMungo1127G1058 Vigna mungo HOM05D003488 ORTHO05D004214 1.1e-29 133.3 94 76.6
Phvul.011G093800 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.4e-29 132.9 94 76.6
Phvul.011G094000 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.4e-29 132.9 94 76.6
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 1.8e-29 132.5 94 75.5
Cpa.g.sc1448.1 Carica papaya HOM05D003488 ORTHO05D004214 9.0e-29 130.2 93 72.0
Manes.11G161600 Manihot esculenta HOM05D003488 ORTHO05D004214 2.0e-28 129.0 93 73.1
THA.LOC104800533 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 2.0e-28 129.0 93 74.2
Lalb_Chr01g0004851 Lupinus albus HOM05D003488 ORTHO05D004214 2.6e-28 128.6 94 73.4
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 4.5e-28 127.9 93 71.0
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 4.5e-28 127.9 93 71.0
Actinidia35463 Actinidia chinensis HOM05D003488 ORTHO05D004214 7.7e-28 127.1 93 71.0
Duzib168G1363 Durio zibethinus HOM05D003488 ORTHO05D004214 7.7e-28 127.1 93 69.9
COL.COLO4_19885 Corchorus olitorius HOM05D003488 ORTHO05D004214 1.0e-27 126.7 93 69.9
Potri.009G164200 Populus trichocarpa HOM05D003488 ORTHO05D004214 1.3e-27 126.3 93 69.9
Dinv29477 Davidia involucrata HOM05D003488 ORTHO05D004214 1.7e-27 125.9 93 69.9
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 2.2e-27 125.6 93 69.9
AUR62009763 Chenopodium quinoa HOM05D003488 ORTHO05D004214 2.9e-27 125.2 94 66.0
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 2.9e-27 125.2 93 75.3
AL2G25690 Arabidopsis lyrata HOM05D003488 ORTHO05D004214 3.8e-27 124.8 93 74.2
AT1G67190 Arabidopsis thaliana HOM05D003488 ORTHO05D004214 3.8e-27 124.8 93 74.2
Carub.0002s1346 Capsella rubella HOM05D003488 ORTHO05D004214 3.8e-27 124.8 93 74.2
BcaB03g15209 Brassica carinata HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
BcaC08g46148 Brassica carinata HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
A07p33820 Brassica napus HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
C06p43110 Brassica napus HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
BolC6t39128H Brassica oleracea HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
BraA07t31008Z Brassica rapa HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
CARHR059640 Cardamine hirsuta HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
Potri.004G203300 Populus trichocarpa HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 71.0
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 5.0e-27 124.4 93 74.2
Gohir.A09G095500 Gossypium hirsutum HOM05D003488 ORTHO05D004214 8.5e-27 123.6 93 67.7
Thecc.09G284200 Theobroma cacao HOM05D003488 ORTHO05D004214 1.1e-26 123.2 93 69.9
TPR.G38236 Trifolium pratense HOM05D003488 ORTHO05D004214 1.1e-26 123.2 73 91.8
TWI31G0838 Tripterygium wilfordii HOM05D003488 ORTHO05D004214 1.4e-26 122.9 93 65.6
MBI17_g08366_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 2.5e-26 122.1 93 69.9
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 2.5e-26 122.1 93 68.8
PSO384G1288 Papaver somniferum HOM05D003488 ORTHO05D004214 3.2e-26 121.7 93 67.7
TAR633G2222 Trochodendron aralioides HOM05D003488 ORTHO05D004214 3.2e-26 121.7 93 69.9
Aqoxy4G02784 Aquilegia oxysepala HOM05D003488 ORTHO05D004214 5.5e-26 120.9 93 68.8
Nitab4.5_0000755g0230 Nicotiana tabacum HOM05D003488 ORTHO05D004214 9.4e-26 120.2 93 67.7
Sopen11g027050 Solanum pennellii HOM05D003488 ORTHO05D004214 9.4e-26 120.2 93 68.8
Nn6g34912 Nelumbo nucifera HOM05D003488 ORTHO05D004214 1.2e-25 119.8 93 66.7
Nitab4.5_0013628g0020 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-25 119.8 93 66.7
PSO339G0354 Papaver somniferum HOM05D003488 ORTHO05D004214 1.2e-25 119.8 93 66.7
Prupe.6G129400 Prunus persica HOM05D003488 ORTHO05D004214 1.2e-25 119.8 93 67.7
CSS0019661 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 1.6e-25 119.4 93 67.7
CiPaw.14G100300 Carya illinoinensis HOM05D003488 ORTHO05D004214 2.1e-25 119.0 93 68.8
Ciclev10028521m.g Citrus clementina HOM05D003488 ORTHO05D004214 2.1e-25 119.0 93 66.7
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 2.1e-25 119.0 93 67.7
Peaxi162Scf00003g00057 Petunia axillaris HOM05D003488 ORTHO05D004214 2.1e-25 119.0 93 68.8
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 2.7e-25 118.6 93 67.7
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 2.7e-25 118.6 93 67.7
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 2.7e-25 118.6 93 67.7
Rhsim01G0205200 Rhododendron simsii HOM05D003488 ORTHO05D004214 2.7e-25 118.6 93 65.6
Atru.chr3.3255 Acer truncatum HOM05D003488 ORTHO05D004214 6.1e-25 117.5 93 68.8
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 6.1e-25 117.5 95 66.3
CDE06G0950 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 1.8e-24 115.9 95 63.2
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 2.3e-24 115.5 93 64.5
Haze_19602 Corylus avellana HOM05D003488 ORTHO05D004214 2.3e-24 115.5 93 63.4
Hund18755 Selenicereus undatus HOM05D003488 ORTHO05D004214 8.8e-24 113.6 94 62.8
EL10Ac7g16924 Beta vulgaris HOM05D003488 ORTHO05D004214 1.1e-23 113.2 94 62.8
GSVIVG01033833001 Vitis vinifera HOM05D003488 ORTHO05D004214 1.1e-23 113.2 93 62.4
FAN09G1414 Fragaria x ananassa HOM05D003488 ORTHO05D004214 1.5e-23 112.8 93 60.2
Hma1.2p1_0084F.1_g043700 Hydrangea macrophylla HOM05D003488 ORTHO05D004214 1.5e-23 112.8 93 62.4
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 2.0e-23 112.5 93 59.1
Manes.04G004000 Manihot esculenta HOM05D003488 ORTHO05D004214 3.3e-23 111.7 93 66.7
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 4.3e-23 111.3 93 58.1
FAN14G3815 Fragaria x ananassa HOM05D003488 ORTHO05D004214 4.3e-23 111.3 93 58.1
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 4.3e-23 111.3 93 58.1
GSVIVG01036133001 Vitis vinifera HOM05D003488 ORTHO05D004214 4.3e-23 111.3 93 63.4
FAN05G0207 Fragaria x ananassa HOM05D003488 ORTHO05D004214 7.4e-23 110.5 93 59.1
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 7.4e-23 110.5 93 65.6
Lj3A997T49 Lonicera japonica HOM05D003488 ORTHO05D004214 7.4e-23 110.5 93 62.4
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 9.7e-23 110.2 93 58.1
CSS0032778 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 1.3e-22 109.8 93 62.4
Phvul.001G189500 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.3e-22 109.8 98 59.2
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 1.7e-22 109.4 93 57.0
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 2.2e-22 109.0 93 64.5
Lsat_1_v5_gn_6_38721 Lactuca sativa HOM05D003488 ORTHO05D004214 3.7e-22 108.2 93 64.5
DCAR_013382 Daucus carota HOM05D003488 ORTHO05D004214 4.8e-22 107.8 93 61.3
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 6.3e-22 107.5 93 60.2
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 8.2e-22 107.1 94 59.6
MSTRG.26643 Avicennia marina HOM05D003488 ORTHO05D004214 1.1e-21 106.7 93 57.0
SEGI_24231 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 1.4e-21 106.3 93 59.1
SEGI_25159 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 1.4e-21 106.3 93 59.1
Cc06_g05690 Coffea canephora HOM05D003488 ORTHO05D004214 1.8e-21 105.9 94 58.5
SalBow3G3938 Salvia bowleyana HOM05D003488 ORTHO05D004214 1.8e-21 105.9 93 60.2
Dinv21216 Davidia involucrata HOM05D003488 ORTHO05D004214 2.4e-21 105.5 93 61.3
Dinv31679 Davidia involucrata HOM05D003488 ORTHO05D004214 2.4e-21 105.5 93 59.1
Nn2g14149 Nelumbo nucifera HOM05D003488 ORTHO05D004214 2.4e-21 105.5 93 60.2
ATR0776G025 Amborella trichopoda HOM05D003488 ORTHO05D004214 3.1e-21 105.1 93 59.1
AUR62028536 Chenopodium quinoa HOM05D003488 ORTHO05D004214 3.1e-21 105.1 94 59.6
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 4.1e-21 104.8 92 60.9
MSTRG.5840 Avicennia marina HOM05D003488 ORTHO05D004214 5.3e-21 104.4 94 58.5
Sc20g0006250 Simmondsia chinensis HOM05D003488 ORTHO05D004214 5.3e-21 104.4 94 56.4
SGA_v2.0_scaffold13G06728 Striga asiatica HOM05D003488 ORTHO05D004214 5.3e-21 104.4 93 58.1
SGA_v2.0_scaffold75G24751 Striga asiatica HOM05D003488 ORTHO05D004214 5.3e-21 104.4 93 58.1
Rhsim03G0075900 Rhododendron simsii HOM05D003488 ORTHO05D004214 6.9e-21 104.0 93 61.3
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 9.1e-21 103.6 93 57.0
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 9.1e-21 103.6 93 63.4
AUR62006173 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.2e-20 103.2 94 58.5
AUR62021589 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.2e-20 103.2 94 58.5
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 1.5e-20 102.8 95 60.0
Sabra04G0137300 Salix brachista HOM05D003488 ORTHO05D004214 3.4e-20 101.7 93 60.2
RcHm_v2.0_Chr3g0473131 Rosa chinensis HOM05D003488 ORTHO05D004214 1.3e-19 99.8 84 59.5
CAN.G397.11 Capsicum annuum HOM05D003488 ORTHO05D004214 2.2e-19 99.0 89 57.3
Oeu009221.1 Olea europaea HOM05D003488 ORTHO05D004214 3.8e-19 98.2 93 54.8
Oeu056924.1 Olea europaea HOM05D003488 ORTHO05D004214 3.8e-19 98.2 93 55.9
Psat4g110920 Pisum sativum HOM05D003488 ORTHO05D004214 5.0e-19 97.8 93 54.8
Migut.J01046 Erythranthe guttata HOM05D003488 ORTHO05D004214 6.5e-19 97.4 93 55.9
Sopen09g004200 Solanum pennellii HOM05D003488 ORTHO05D004214 6.5e-19 97.4 89 56.2
PGSC0003DMG403002701 Solanum tuberosum HOM05D003488 ORTHO05D004214 6.5e-19 97.4 89 56.2
Eucgr.A01498 Eucalyptus grandis HOM05D003488 ORTHO05D004214 1.4e-18 96.3 93 55.9
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 1.4e-18 96.3 93 53.8
Eucgr.B03854 Eucalyptus grandis HOM05D003488 ORTHO05D004214 1.9e-18 95.9 89 60.7
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 2.5e-18 95.5 93 55.9
Nitab4.5_0001725g0160 Nicotiana tabacum HOM05D003488 ORTHO05D004214 2.5e-18 95.5 89 56.2
Psat6g013800 Pisum sativum HOM05D003488 ORTHO05D004214 2.5e-18 95.5 93 55.9
Nitab4.5_0000132g0010 Nicotiana tabacum HOM05D003488 ORTHO05D004214 3.2e-18 95.1 89 53.9
Nitab4.5_0000963g0070 Nicotiana tabacum HOM05D003488 ORTHO05D004214 3.2e-18 95.1 89 53.9
Ah.15g090910 Amaranthus hybridus HOM05D003488 ORTHO05D004214 5.5e-18 94.4 94 57.4
CAN.G1039.14 Capsicum annuum HOM05D003488 ORTHO05D004214 5.5e-18 94.4 89 51.7
Sopen10g032950 Solanum pennellii HOM05D003488 ORTHO05D004214 7.2e-18 94.0 89 51.7
PGSC0003DMG400028258 Solanum tuberosum HOM05D003488 ORTHO05D004214 7.2e-18 94.0 89 51.7
Solyc09g009470.1 Solanum lycopersicum HOM05D003488 ORTHO05D004214 9.4e-18 93.6 87 55.2
Solyc10g083480.2 Solanum lycopersicum HOM05D003488 ORTHO05D004214 9.4e-18 93.6 89 51.7
CiPaw.13G136000 Carya illinoinensis HOM05D003488 ORTHO05D004214 1.2e-17 93.2 94 59.6
Nitab4.5_0005483g0030 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-17 93.2 87 56.3
Peaxi162Scf00290g00084 Petunia axillaris HOM05D003488 ORTHO05D004214 1.2e-17 93.2 87 56.3
CiPaw.13G136100 Carya illinoinensis HOM05D003488 ORTHO05D004214 2.1e-17 92.4 94 59.6
Psat3g033640 Pisum sativum HOM05D003488 ORTHO05D004214 2.1e-17 92.4 93 58.1
Ca_08999_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 3.6e-17 91.7 93 54.8
Sed0023871 Sechium edule HOM05D003488 ORTHO05D004214 4.7e-17 91.3 95 50.5
Peaxi162Scf00163g00052 Petunia axillaris HOM05D003488 ORTHO05D004214 6.1e-17 90.9 87 55.2
CANSAT54G1372 Cannabis sativa HOM05D003488 ORTHO05D004214 1.4e-16 89.7 94 53.2
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.4e-16 89.7 75 62.7
Os01g0859600 Oryza sativa ssp. japonica HOM05D003488 ORTHO05D004214 1.8e-16 89.4 94 53.2
TAR636G2058 Trochodendron aralioides HOM05D000382 ORTHO05D000391 2.3e-16 89.0 92 60.9
SEGI_39785 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 5.1e-16 87.8 93 47.3
Medtr1g060040 Medicago truncatula HOM05D003488 ORTHO05D004214 6.7e-16 87.4 79 60.8
HPP92_003226 Vanilla planifolia HOM05D003488 ORTHO05D004214 1.5e-15 86.3 94 53.2
ClCG04G010010 Citrullus lanatus HOM05D003488 ORTHO05D004214 7.4e-15 84.0 79 58.2
MELO3C024542.2 Cucumis melo HOM05D003488 ORTHO05D004214 7.4e-15 84.0 79 58.2
CsaV3_6G040650 Cucumis sativus L. HOM05D003488 ORTHO05D004214 7.4e-15 84.0 79 58.2
SalBow5G1330 Salvia bowleyana HOM05D003488 ORTHO05D004214 9.7e-15 83.6 93 49.5
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 2.2e-14 82.4 95 48.4
PGR004G0231 Punica granatum HOM05D003488 ORTHO05D004214 1.8e-13 79.3 93 45.2
CDE08G1419 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 1.2e-12 76.6 77 49.4
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 1.6e-12 76.3 93 50.5
Lsat_1_v5_gn_8_76881 Lactuca sativa HOM05D003488 ORTHO05D004214 5.9e-12 74.3 93 45.2
Actinidia07930 Actinidia chinensis HOM05D003488 ORTHO05D004214 1.3e-11 73.2 75 50.7
PGR102G1861 Punica granatum HOM05D003488 ORTHO05D004214 1.9e-10 69.3 98 44.9
TPR.G21934 Trifolium pratense HOM05D003488 ORTHO05D004214 7.2e-10 67.4 93 47.3
CANSAT80G2309 Cannabis sativa HOM05D003488 ORTHO05D004214 8.0e-09 63.9 83 43.4
ECA236G1444 Erigeron canadensis HOM05D003488 ORTHO05D004214 1.0e-08 63.5 87 41.4
CANSAT80G1046 Cannabis sativa HOM05D003488 ORTHO05D004214 1.8e-08 62.8 83 42.2
Mapoly0037s0051 Marchantia polymorpha HOM05D003488 ORTHO05D004214 5.2e-08 61.2 81 38.3
Pp3c25_4500 Physcomitrium patens HOM05D003488 ORTHO05D004214 6.7e-08 60.8 93 39.8
Lalb_Chr19g0136481 Lupinus albus HOM05D003488 ORTHO05D004214 1.5e-07 59.7 49 71.4
Nitab4.5_0000202g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.5e-07 59.7 89 43.8
HanXRQChr02g0044451 Helianthus annuus HOM05D003488 ORTHO05D004214 7.5e-07 57.4 87 37.9
THA.LOC104815726 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 8.2e-06 53.9 74 40.5


User provided reference genes

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