Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 4.9e-249 864.0 434 100.0
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.0e-217 760.0 434 88.2
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.6e-210 735.3 441 85.0
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 3.0e-198 695.3 435 81.1
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.1e-195 685.3 439 80.0
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 7.0e-195 684.1 433 80.1
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 3.2e-192 675.2 434 77.9
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.3e-190 669.1 437 78.3
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 6.8e-190 667.5 435 78.6
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.7e-186 655.6 437 75.3
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 2.3e-185 652.5 439 73.6
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 3.8e-185 651.7 439 74.5
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 3.3e-184 648.7 427 74.5
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 6.1e-183 644.4 440 73.4
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 8.0e-183 644.0 338 92.0
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.3e-182 642.5 437 74.6
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 8.9e-182 640.6 430 76.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 8.9e-182 640.6 433 73.9
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.2e-181 640.2 422 73.2
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.6e-181 639.0 418 73.9
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 3.4e-181 638.6 440 73.9
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.4e-181 638.3 416 74.3
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.3e-180 636.7 422 72.7
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.7e-180 636.3 406 77.6
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.7e-180 636.3 430 74.4
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.7e-180 636.3 438 73.7
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.2e-180 636.0 430 74.2
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.7e-180 635.2 438 73.5
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.3e-180 634.0 428 73.6
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.4e-179 632.5 406 77.3
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 3.1e-179 632.1 431 74.0
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 7.0e-179 630.9 399 76.2
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.0e-179 630.9 428 73.4
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 7.0e-179 630.9 427 71.4
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.0e-178 629.4 428 73.1
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.7e-178 629.0 438 73.5
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.9e-177 625.5 440 72.5
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.1e-176 623.6 410 73.7
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.5e-176 623.2 432 72.7
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.9e-176 622.9 435 71.7
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 4.3e-176 621.7 417 72.9
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.3e-176 620.9 452 71.5
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 4.7e-175 618.2 408 73.5
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.0e-174 617.1 427 71.4
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.4e-174 616.7 423 71.2
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 9.8e-173 610.5 435 69.7
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.7e-172 609.8 422 71.6
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.2e-172 609.4 438 71.7
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 8.3e-172 607.4 428 70.6
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.7e-170 602.4 433 71.1
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 3.5e-170 602.1 405 72.6
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 4.6e-170 601.7 428 69.4
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 4.6e-170 601.7 431 69.1
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.7e-169 599.7 397 72.5
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 5.0e-169 598.2 400 72.2
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 4.3e-168 595.1 419 69.9
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 4.3e-168 595.1 430 67.2
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 5.6e-168 594.7 427 68.6
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-167 593.6 487 64.7
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.6e-167 593.2 396 71.7
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 2.1e-167 592.8 435 67.8
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 8.0e-167 590.9 422 68.0
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 8.0e-167 590.9 422 68.0
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.1e-166 590.5 422 68.0
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.1e-166 590.5 424 68.6
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.1e-166 590.5 424 68.6
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.8e-166 589.7 422 68.0
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.8e-166 589.7 393 71.5
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 2.3e-166 589.3 393 74.8
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.3e-166 589.3 393 75.8
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 6.8e-166 587.8 396 70.5
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 8.9e-166 587.4 433 70.0
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.5e-165 586.6 396 71.5
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 4.4e-165 585.1 424 68.6
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.4e-165 585.1 422 67.5
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 4.1e-163 578.6 442 65.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 9.2e-163 577.4 434 66.8
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.5e-162 575.5 440 65.5
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.5e-162 575.5 464 64.0
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 3.9e-161 572.0 421 66.7
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 8.6e-161 570.9 421 66.7
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 3.3e-160 568.9 428 67.1
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 5.6e-160 568.2 393 70.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 5.6e-160 568.2 453 63.6
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 2.8e-159 565.8 429 66.2
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.6e-159 565.5 420 66.7
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 8.9e-158 560.8 397 70.0
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.5e-157 560.1 389 69.9
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 2.0e-157 559.7 385 68.8
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 4.6e-154 548.5 430 63.5
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.7e-153 546.6 397 65.0
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.9e-152 543.1 383 67.9
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 5.2e-150 535.0 423 64.3
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 7.6e-149 531.2 372 68.3
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 3.8e-148 528.9 390 65.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 9.2e-147 524.2 396 63.4
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.1e-142 510.8 323 75.5
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.2e-141 507.3 420 58.3
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 8.4e-140 501.1 402 63.2
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.1e-138 496.5 425 61.2
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 2.3e-137 493.0 418 60.3
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.9e-137 492.3 349 69.9
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 3.3e-136 489.2 385 62.9
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.8e-135 485.3 302 76.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.1e-134 484.2 386 61.4
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 2.4e-131 473.0 389 60.2
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 9.3e-131 471.1 391 58.3
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 3.5e-130 469.2 393 60.6
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.0e-129 467.6 285 81.8
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 6.2e-127 458.4 337 65.0
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 3.1e-126 456.1 443 54.0
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 6.9e-126 454.9 302 70.5
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 9.0e-126 454.5 337 64.4
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.6e-125 451.4 337 64.1
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 5.1e-121 438.7 283 76.3
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.6e-106 390.6 280 70.0
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 9.7e-104 381.3 327 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.2e-101 374.4 320 56.9
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 2.0e-93 347.1 401 45.1
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.5e-91 340.1 274 59.1
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.0e-89 333.2 221 69.7
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.5e-75 287.7 230 65.7
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 8.8e-73 278.5 321 45.2
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.2e-72 278.1 227 61.7
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.2e-72 278.1 204 65.2
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 5.0e-68 262.7 238 52.1
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 6.6e-68 262.3 197 61.4
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 3.6e-66 256.5 173 71.7
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.7e-53 213.8 145 69.7
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 8.6e-44 182.2 163 58.3
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-41 175.3 124 61.3
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 2.0e-40 171.0 135 52.6
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.3e-36 157.5 134 52.2
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 2.1e-34 151.0 130 60.0
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.5e-32 144.8 181 43.1
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 4.4e-32 143.3 156 52.6
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 6.4e-31 139.4 121 59.5
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 4.0e-25 120.2 296 30.7
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.0e-25 120.2 390 28.2
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.5e-24 118.2 94 66.0
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.6e-21 108.2 52 96.2
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 2.3e-20 104.4 63 71.4
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-15 88.2 58 69.0
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 1.4e-09 68.6 79 48.1
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 1.4e-09 68.6 79 48.1
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.7e-07 61.6 74 43.2


User provided reference genes

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