Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38175 Trifolium pratense HOM05D003616 ORTHO05D004289 2.9e-120 435.3 226 100.0
Medtr3g114070 Medicago truncatula HOM05D003616 ORTHO05D004289 3.1e-85 318.9 194 82.0
Psat5g012880 Pisum sativum HOM05D003616 ORTHO05D004289 1.3e-80 303.5 194 78.4
Ca_15480_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 2.3e-80 302.8 194 79.4
Lj1g0017366 Lotus japonicus HOM05D003616 ORTHO05D004289 1.5e-60 236.9 196 66.8
Phvul.009G009900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 2.5e-55 219.5 195 61.0
arahy.Tifrunner.gnm1.ann1.MX1HG7 Arachis hypogaea HOM05D003616 ORTHO05D004289 2.8e-54 216.1 200 60.5
Glyma.04G023200 Glycine max HOM05D003616 ORTHO05D004289 3.7e-54 215.7 198 60.6
VMungo1309G2159 Vigna mungo HOM05D003616 ORTHO05D004289 3.7e-54 215.7 195 60.0
arahy.Tifrunner.gnm1.ann1.TXJ4LD Arachis hypogaea HOM05D003616 ORTHO05D004289 1.4e-53 213.8 201 59.2
Lalb_Chr08g0246201 Lupinus albus HOM05D003616 ORTHO05D004289 3.1e-53 212.6 195 60.0
Gohir.A05G184900 Gossypium hirsutum HOM05D003616 ORTHO05D004289 6.7e-48 194.9 195 54.4
Gorai.009G193000 Gossypium raimondii HOM05D003616 ORTHO05D004289 1.1e-47 194.1 195 54.4
Gohir.D05G187700 Gossypium hirsutum HOM05D003616 ORTHO05D004289 7.4e-47 191.4 195 53.8
Manes.18G011100 Manihot esculenta HOM05D003616 ORTHO05D004289 1.6e-46 190.3 195 51.3
COL.COLO4_26116 Corchorus olitorius HOM05D003616 ORTHO05D004289 4.8e-46 188.7 195 53.3
Oeu026133.1 Olea europaea HOM05D003616 ORTHO05D004289 1.8e-45 186.8 144 63.2
Atru.chr13.252 Acer truncatum HOM05D003616 ORTHO05D004289 4.1e-45 185.7 199 51.3
Duzib093G0398 Durio zibethinus HOM05D003616 ORTHO05D004289 5.3e-45 185.3 199 53.3
CSS0016648 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 6.9e-45 184.9 149 60.4
Potri.005G242500 Populus trichocarpa HOM05D003616 ORTHO05D004289 6.9e-45 184.9 198 50.5
TWI12G0315 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 3.4e-44 182.6 208 50.5
QL02p012220 Quercus lobata HOM05D003616 ORTHO05D004289 4.5e-44 182.2 193 52.8
CiPaw.07G146600 Carya illinoinensis HOM05D003616 ORTHO05D004289 1.0e-43 181.0 159 59.1
Sabra05G0187700 Salix brachista HOM05D003616 ORTHO05D004289 2.2e-43 179.9 198 50.5
Hma1.2p1_0023F.1_g015660 Hydrangea macrophylla HOM05D003616 ORTHO05D004289 2.9e-43 179.5 152 59.9
Dinv39539 Davidia involucrata HOM05D003616 ORTHO05D004289 6.5e-43 178.3 206 49.0
Thhalv10027850m.g Eutrema salsugineum HOM05D003616 ORTHO05D004289 6.5e-43 178.3 177 53.7
Ciclev10001861m.g Citrus clementina HOM05D003616 ORTHO05D004289 1.4e-42 177.2 202 52.0
Sp7g08670 Schrenkiella parvula HOM05D003616 ORTHO05D004289 1.9e-42 176.8 177 54.8
EL10Ac1g02157 Beta vulgaris HOM05D003616 ORTHO05D004289 2.5e-42 176.4 195 48.7
MBI04_g06229_MAGBIO Magnolia biondii HOM05D003616 ORTHO05D004289 5.5e-42 175.3 159 59.7
Prupe.1G362400 Prunus persica HOM05D003616 ORTHO05D004289 5.5e-42 175.3 201 52.7
CANSAT25G0701 Cannabis sativa HOM05D003616 ORTHO05D004289 7.2e-42 174.9 200 50.0
AL8G19670 Arabidopsis lyrata HOM05D003616 ORTHO05D004289 1.2e-41 174.1 183 52.5
Nn4g24400 Nelumbo nucifera HOM05D003616 ORTHO05D004289 1.2e-41 174.1 140 62.9
Nitab4.5_0006505g0020 Nicotiana tabacum HOM05D003616 ORTHO05D004289 1.6e-41 173.7 195 47.7
Cfa013983 Carpinus fangiana HOM05D003616 ORTHO05D004289 2.1e-41 173.3 200 49.0
Thecc.08G048000 Theobroma cacao HOM05D003616 ORTHO05D004289 2.1e-41 173.3 197 51.8
AT5G42150 Arabidopsis thaliana HOM05D003616 ORTHO05D004289 2.7e-41 172.9 183 52.5
Migut.N03175 Erythranthe guttata HOM05D003616 ORTHO05D004289 3.6e-41 172.6 137 62.0
Migut.C00863 Erythranthe guttata HOM05D003616 ORTHO05D004289 4.6e-41 172.2 206 48.5
PSO541G0876 Papaver somniferum HOM05D003616 ORTHO05D004289 4.6e-41 172.2 131 64.1
Actinidia15440 Actinidia chinensis HOM05D003616 ORTHO05D004289 6.1e-41 171.8 137 60.6
CARHR284720 Cardamine hirsuta HOM05D003616 ORTHO05D004289 6.1e-41 171.8 178 52.8
BcaB04g19405 Brassica carinata HOM05D003616 ORTHO05D004289 7.9e-41 171.4 180 52.8
Carub.0008s0714 Capsella rubella HOM05D003616 ORTHO05D004289 7.9e-41 171.4 145 60.0
ClCG08G014130 Citrullus lanatus HOM05D003616 ORTHO05D004289 7.9e-41 171.4 200 50.5
Sc02g0008690 Simmondsia chinensis HOM05D003616 ORTHO05D004289 7.9e-41 171.4 195 54.4
Ah.11g040000 Amaranthus hybridus HOM05D003616 ORTHO05D004289 1.0e-40 171.0 196 50.5
Eucgr.H00953 Eucalyptus grandis HOM05D003616 ORTHO05D004289 1.0e-40 171.0 202 52.0
Zm00001eb086680 Zea mays HOM05D003616 ORTHO05D004289 1.4e-40 170.6 199 50.3
Lsat_1_v5_gn_2_9140 Lactuca sativa HOM05D003616 ORTHO05D004289 1.8e-40 170.2 132 61.4
Lj4A21T62 Lonicera japonica HOM05D003616 ORTHO05D004289 2.3e-40 169.9 212 47.2
PSO675G9362 Papaver somniferum HOM05D003616 ORTHO05D004289 2.3e-40 169.9 131 63.4
TAR629G1297 Trochodendron aralioides HOM05D003616 ORTHO05D004289 2.3e-40 169.9 105 75.2
FAN15G3669 Fragaria x ananassa HOM05D003616 ORTHO05D004289 3.0e-40 169.5 201 49.3
FAN27G0470 Fragaria x ananassa HOM05D003616 ORTHO05D004289 3.9e-40 169.1 171 53.8
Rhsim06G0018600 Rhododendron simsii HOM05D003616 ORTHO05D004289 3.9e-40 169.1 200 51.0
vmacro07569 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 5.1e-40 168.7 200 50.5
A02p27080 Brassica napus HOM05D003616 ORTHO05D004289 6.7e-40 168.3 177 52.5
BraA02t07726Z Brassica rapa HOM05D003616 ORTHO05D004289 6.7e-40 168.3 177 52.5
CsaV3_2G024290 Cucumis sativus L. HOM05D003616 ORTHO05D004289 6.7e-40 168.3 197 48.2
BolC2t10330H Brassica oleracea HOM05D003616 ORTHO05D004289 8.8e-40 167.9 177 52.0
FvH4_2g38150 Fragaria vesca HOM05D003616 ORTHO05D004289 1.1e-39 167.5 191 50.8
HanXRQChr06g0183781 Helianthus annuus HOM05D003616 ORTHO05D004289 1.1e-39 167.5 129 62.8
CSS0013276 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 1.5e-39 167.2 126 65.9
Cc02_g37150 Coffea canephora HOM05D003616 ORTHO05D004289 1.5e-39 167.2 197 46.7
TAR625G0790 Trochodendron aralioides HOM05D003616 ORTHO05D004289 1.5e-39 167.2 123 65.9
BcaC03g16480 Brassica carinata HOM05D003616 ORTHO05D004289 2.0e-39 166.8 177 52.0
C02p42910 Brassica napus HOM05D003616 ORTHO05D004289 2.0e-39 166.8 177 52.0
SGA_v2.0_scaffold92G28201 Striga asiatica HOM05D003616 ORTHO05D004289 2.0e-39 166.8 122 65.6
MD08G1010100 Malus domestica HOM05D003616 ORTHO05D004289 2.5e-39 166.4 201 50.7
Potri.012G046600 Populus trichocarpa HOM05D003616 ORTHO05D004289 2.5e-39 166.4 128 65.6
RcHm_v2.0_Chr6g0303331 Rosa chinensis HOM05D003616 ORTHO05D004289 2.5e-39 166.4 202 49.0
GSVIVG01009954001 Vitis vinifera HOM05D003616 ORTHO05D004289 2.5e-39 166.4 143 60.8
Atru.chr9.1732 Acer truncatum HOM05D003616 ORTHO05D004289 3.3e-39 166.0 128 65.6
Cpa.g.sc3.395 Carica papaya HOM05D003616 ORTHO05D004289 3.3e-39 166.0 103 76.7
Haze_22668 Corylus avellana HOM05D003616 ORTHO05D004289 4.3e-39 165.6 112 71.4
SalBow8G4338 Salvia bowleyana HOM05D003616 ORTHO05D004289 4.3e-39 165.6 144 59.0
TWI60G1662 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 4.3e-39 165.6 165 55.2
CiPaw.15G143500 Carya illinoinensis HOM05D003616 ORTHO05D004289 7.4e-39 164.9 127 62.2
CsaV3_1G004390 Cucumis sativus L. HOM05D003616 ORTHO05D004289 7.4e-39 164.9 128 65.6
Oeu010273.1 Olea europaea HOM05D003616 ORTHO05D004289 7.4e-39 164.9 149 57.7
Aa31LG9G12310 Aethionema arabicum HOM05D003616 ORTHO05D004289 9.7e-39 164.5 146 60.3
Eucgr.B01000 Eucalyptus grandis HOM05D003616 ORTHO05D004289 9.7e-39 164.5 149 57.7
Potri.015G038300 Populus trichocarpa HOM05D003616 ORTHO05D004289 9.7e-39 164.5 128 64.8
MSTRG.24236 Avicennia marina HOM05D003616 ORTHO05D004289 1.3e-38 164.1 125 61.6
PGR031G0359 Punica granatum HOM05D003616 ORTHO05D004289 1.3e-38 164.1 196 48.0
MELO3C011352.2 Cucumis melo HOM05D003616 ORTHO05D004289 1.7e-38 163.7 195 47.7
ECA238G4543 Erigeron canadensis HOM05D003616 ORTHO05D004289 1.7e-38 163.7 124 62.9
CAN.G311.50 Capsicum annuum HOM05D003616 ORTHO05D004289 2.2e-38 163.3 146 54.8
SGA_v2.0_scaffold19G08556 Striga asiatica HOM05D003616 ORTHO05D004289 2.2e-38 163.3 219 44.7
Cc10_g01410 Coffea canephora HOM05D003616 ORTHO05D004289 3.7e-38 162.5 202 45.0
MELO3C017361.2 Cucumis melo HOM05D003616 ORTHO05D004289 4.8e-38 162.2 129 62.0
Duzib084G0113 Durio zibethinus HOM05D003616 ORTHO05D004289 4.8e-38 162.2 103 73.8
Sabra12G0032700 Salix brachista HOM05D003616 ORTHO05D004289 4.8e-38 162.2 130 64.6
PSO170G1220 Papaver somniferum HOM05D003616 ORTHO05D004289 6.3e-38 161.8 145 54.5
QL10p029638 Quercus lobata HOM05D003616 ORTHO05D004289 6.3e-38 161.8 103 74.8
SEGI_35058 Sequoiadendron giganteum HOM05D003616 ORTHO05D004289 6.3e-38 161.8 148 57.4
Haze_18855 Corylus avellana HOM05D003616 ORTHO05D004289 1.1e-37 161.0 128 64.1
Sc10g0009170 Simmondsia chinensis HOM05D003616 ORTHO05D004289 1.4e-37 160.6 130 63.8
Solyc04g081740.3 Solanum lycopersicum HOM05D003616 ORTHO05D004289 1.4e-37 160.6 134 56.7
Sopen04g035370 Solanum pennellii HOM05D003616 ORTHO05D004289 1.4e-37 160.6 134 56.7
HPP92_015015 Vanilla planifolia HOM05D003616 ORTHO05D004289 1.4e-37 160.6 145 57.2
Cfa019655 Carpinus fangiana HOM05D003616 ORTHO05D004289 1.8e-37 160.2 105 76.2
Os04g0244400 Oryza sativa ssp. japonica HOM05D003616 ORTHO05D004289 1.8e-37 160.2 127 61.4
SGA_v2.0_scaffold25G11209 Striga asiatica HOM05D003616 ORTHO05D004289 1.8e-37 160.2 143 55.9
Ciclev10008944m.g Citrus clementina HOM05D003616 ORTHO05D004289 2.4e-37 159.8 103 74.8
Aqoxy2G03601 Aquilegia oxysepala HOM05D003616 ORTHO05D004289 3.1e-37 159.5 125 62.4
Hund05170 Selenicereus undatus HOM05D003616 ORTHO05D004289 3.1e-37 159.5 126 65.9
Actinidia28138 Actinidia chinensis HOM05D003616 ORTHO05D004289 4.1e-37 159.1 140 58.6
AUR62040567 Chenopodium quinoa HOM05D003616 ORTHO05D004289 4.1e-37 159.1 202 45.5
PGR083G0078 Punica granatum HOM05D003616 ORTHO05D004289 4.1e-37 159.1 129 62.8
ATR0180G023 Amborella trichopoda HOM05D003616 ORTHO05D004289 5.3e-37 158.7 103 73.8
CDE05G1955 Ceratophyllum demersum HOM05D003616 ORTHO05D004289 5.3e-37 158.7 149 53.7
Lj5A158G70 Lonicera japonica HOM05D003616 ORTHO05D004289 5.3e-37 158.7 139 58.3
Thecc.03G055800 Theobroma cacao HOM05D003616 ORTHO05D004289 5.3e-37 158.7 201 48.8
TWI15G0798 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 5.3e-37 158.7 141 58.9
Sed0021008 Sechium edule HOM05D003616 ORTHO05D004289 6.9e-37 158.3 123 63.4
RcHm_v2.0_Chr7g0178351 Rosa chinensis HOM05D003616 ORTHO05D004289 9.1e-37 157.9 133 61.7
Sed0022788 Sechium edule HOM05D003616 ORTHO05D004289 9.1e-37 157.9 127 62.2
GSVIVG01008442001 Vitis vinifera HOM05D003616 ORTHO05D004289 1.5e-36 157.1 125 60.8
Gohir.A03G092600 Gossypium hirsutum HOM05D003616 ORTHO05D004289 2.0e-36 156.8 103 72.8
Gohir.D02G121200 Gossypium hirsutum HOM05D003616 ORTHO05D004289 2.0e-36 156.8 103 72.8
FAN08G3458 Fragaria x ananassa HOM05D003616 ORTHO05D004289 2.6e-36 156.4 133 62.4
Manes.14G171500 Manihot esculenta HOM05D003616 ORTHO05D004289 3.4e-36 156.0 126 64.3
HanXRQChr07g0204451 Helianthus annuus HOM05D003616 ORTHO05D004289 4.5e-36 155.6 131 58.0
PSO700G0251 Papaver somniferum HOM05D003616 ORTHO05D004289 4.5e-36 155.6 145 52.4
unitig_748.g7720 Utricularia gibba HOM05D003616 ORTHO05D004289 4.5e-36 155.6 152 56.6
CANSAT80G0515 Cannabis sativa HOM05D003616 ORTHO05D004289 5.9e-36 155.2 124 62.9
Ca_25333_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 1.3e-35 154.1 103 72.8
FAN18G4023 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.3e-35 154.1 141 56.7
Sed0005025 Sechium edule HOM05D003616 ORTHO05D004289 1.3e-35 154.1 131 61.1
FAN04G2471 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.7e-35 153.7 141 56.7
arahy.Tifrunner.gnm1.ann1.YQ88M5 Arachis hypogaea HOM05D003616 ORTHO05D004289 2.2e-35 153.3 124 62.9
TPR.G8619 Trifolium pratense HOM05D003616 ORTHO05D004289 2.2e-35 153.3 127 63.8
MD14G1236600 Malus domestica HOM05D003616 ORTHO05D004289 3.8e-35 152.5 128 61.7
arahy.Tifrunner.gnm1.ann1.0SP0C0 Arachis hypogaea HOM05D003616 ORTHO05D004289 5.0e-35 152.1 124 62.1
Medtr6g069420 Medicago truncatula HOM05D003616 ORTHO05D004289 6.5e-35 151.8 125 60.8
THA.LOC104798670 Tarenaya hassleriana HOM05D003616 ORTHO05D004289 6.5e-35 151.8 150 55.3
Lalb_Chr14g0370571 Lupinus albus HOM05D003616 ORTHO05D004289 8.5e-35 151.4 126 61.9
Pp3c22_13980 Physcomitrium patens HOM05D003616 ORTHO05D004289 8.5e-35 151.4 107 67.3
Psat1g033600 Pisum sativum HOM05D003616 ORTHO05D004289 8.5e-35 151.4 123 61.0
DCAR_003546 Daucus carota HOM05D003616 ORTHO05D004289 1.1e-34 151.0 103 68.0
Gorai.005G133000 Gossypium raimondii HOM05D003616 ORTHO05D004289 1.4e-34 150.6 104 71.2
HanXRQChr14g0455291 Helianthus annuus HOM05D003616 ORTHO05D004289 4.2e-34 149.1 103 68.9
Phvul.004G150900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 9.4e-34 147.9 130 56.9
Pp3c19_15500 Physcomitrium patens HOM05D003616 ORTHO05D004289 9.4e-34 147.9 107 65.4
Lj2g0015525 Lotus japonicus HOM05D003616 ORTHO05D004289 1.2e-33 147.5 103 69.9
VMungo0464G1067 Vigna mungo HOM05D003616 ORTHO05D004289 1.6e-33 147.1 131 57.3
Glyma.09G177000 Glycine max HOM05D003616 ORTHO05D004289 2.7e-33 146.4 131 57.3
Lsat_1_v5_gn_2_108180 Lactuca sativa HOM05D003616 ORTHO05D004289 2.7e-33 146.4 127 57.5
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 3.6e-33 146.0 104 66.3
ATR0626G339 Amborella trichopoda HOM05D003616 ORTHO05D004289 4.7e-33 145.6 147 53.1
Glyma.07G102200 Glycine max HOM05D003616 ORTHO05D004289 6.1e-33 145.2 171 49.1
FvH4_5g17390 Fragaria vesca HOM05D003616 ORTHO05D004289 1.0e-32 144.4 132 54.5
CBR_g28548 Chara braunii HOM05D003616 ORTHO05D004289 8.8e-32 141.4 98 69.4
Sabra15G0037100 Salix brachista HOM05D003616 ORTHO05D004289 8.8e-32 141.4 117 61.5
AUR62013931 Chenopodium quinoa HOM05D003616 ORTHO05D004289 4.4e-31 139.0 251 36.3
Mapoly0126s0030 Marchantia polymorpha HOM05D003616 ORTHO05D004289 4.4e-31 139.0 101 62.4
Eucgr.H00955 Eucalyptus grandis HOM05D003616 ORTHO05D004289 6.3e-30 135.2 139 51.1
SMO140G0111 Selaginella moellendorffii HOM05D003616 ORTHO05D004289 1.0e-27 127.9 126 51.6
Nn3g18380 Nelumbo nucifera HOM05D003616 ORTHO05D004289 1.3e-27 127.5 66 89.4
Oeu007366.1 Olea europaea HOM05D003616 ORTHO05D004289 1.6e-25 120.6 121 48.8
ClCG06G014280 Citrullus lanatus HOM05D003616 ORTHO05D004289 3.6e-25 119.4 86 67.4
Peaxi162Scf00860g00047 Petunia axillaris HOM05D003616 ORTHO05D004289 3.0e-24 116.3 80 66.2
VMungo1309G0063 Vigna mungo HOM05D003616 ORTHO05D004289 4.4e-23 112.5 79 69.6
VMungo1309G1258 Vigna mungo HOM05D003616 ORTHO05D004289 1.7e-22 110.5 104 57.7
MCO10G259 Micromonas commoda HOM05D003616 ORTHO05D004289 6.3e-22 108.6 105 54.3
MD15G1010000 Malus domestica HOM05D003616 ORTHO05D004289 1.4e-21 107.5 68 72.1
vmacro17780 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 2.4e-21 106.7 78 65.4
PRCOL_00004876 Prasinoderma coloniale HOM05D003616 ORTHO05D004289 7.0e-21 105.1 167 39.5
Cre07.g319100 Chlamydomonas reinhardtii HOM05D003616 ORTHO05D004289 1.5e-15 87.4 70 54.3
Lalb_Chr22g0353561 Lupinus albus HOM05D003616 ORTHO05D004289 1.7e-14 84.0 72 58.3
Hund01671 Selenicereus undatus HOM05D003616 ORTHO05D383349 5.9e-12 75.5 90 48.9
Lj9A420T36 Lonicera japonica HOM05D003616 ORTHO05D004289 5.5e-10 68.9 65 53.8
Prupe.5G233700 Prunus persica HOM05D003616 ORTHO05D004289 7.2e-10 68.6 127 35.4
Actinidia17002 Actinidia chinensis HOM05D003616 ORTHO05D004289 9.4e-10 68.2 195 28.2
Dinv17550 Davidia involucrata HOM05D003616 ORTHO05D004289 2.1e-09 67.0 103 39.8
TPR.G20844 Trifolium pratense HOM05D003616 ORTHO05D410923 2.8e-06 56.6 25 100.0


User provided reference genes

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