Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 3.3e-43 177.9 87 100.0
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 2.5e-27 125.2 85 67.1
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.5e-24 115.9 86 67.4
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 3.4e-24 114.8 86 65.1
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 3.4e-24 114.8 83 65.1
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 4.9e-23 110.9 78 66.7
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 1.4e-22 109.4 86 58.1
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.9e-22 109.0 83 62.7
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 4.1e-22 107.8 86 57.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 5.4e-22 107.5 85 61.2
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 7.1e-22 107.1 79 67.1
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.6e-21 105.9 83 62.7
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 2.7e-21 105.1 86 62.8
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 2.7e-21 105.1 86 62.8
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 4.6e-21 104.4 82 63.4
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.0e-20 103.2 84 63.1
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.3e-20 102.8 89 58.4
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.3e-20 102.1 87 59.8
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 1.1e-19 99.8 87 59.8
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 4.3e-19 97.8 84 59.5
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 2.8e-18 95.1 84 52.4
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 3.6e-18 94.7 78 60.3
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.1e-17 93.2 92 51.1
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.0e-17 91.3 83 55.4
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.2e-16 89.7 86 54.7
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.0e-16 89.0 86 53.5
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.0e-16 89.0 88 53.4
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.9e-15 85.1 74 58.1
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 8.4e-15 83.6 74 58.1
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 8.4e-15 83.6 79 57.0
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 1.9e-14 82.4 81 54.3
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.4e-14 82.0 81 54.3
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.4e-14 82.0 90 47.8
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.2e-14 81.6 80 53.8
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 4.2e-14 81.3 81 50.6
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 5.4e-14 80.9 92 45.7
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 2.7e-13 78.6 79 57.0
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 4.6e-13 77.8 85 50.6
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 6.0e-13 77.4 79 49.4
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.8e-13 77.0 77 50.6
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.0e-12 76.6 76 52.6
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.3e-12 76.3 76 46.1
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 3.0e-12 75.1 77 46.8
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 8.7e-12 73.6 56 58.9
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.1e-11 73.2 80 43.8
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 1.9e-11 72.4 73 47.9
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 1.9e-11 72.4 76 42.1
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 2.5e-11 72.0 80 45.0
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 4.3e-11 71.2 83 44.6
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 4.3e-11 71.2 64 51.6
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 5.6e-11 70.9 87 43.7
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.6e-11 70.9 82 37.8
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 5.6e-11 70.9 67 53.7
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.3e-11 70.5 82 37.8
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 7.3e-11 70.5 73 47.9
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 7.3e-11 70.5 79 51.9
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 9.6e-11 70.1 87 43.7
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 9.6e-11 70.1 80 46.2
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 1.3e-10 69.7 85 38.8
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 1.3e-10 69.7 87 47.1
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.6e-10 69.3 80 41.2
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.6e-10 69.3 87 40.2
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.6e-10 69.3 77 46.8
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 2.1e-10 68.9 80 37.5
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.1e-10 68.9 78 47.4
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 2.8e-10 68.6 80 41.2
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.8e-10 68.6 82 36.6
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.6e-10 68.2 87 40.2
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 4.8e-10 67.8 70 44.3
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 6.2e-10 67.4 80 40.0
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.2e-10 67.4 87 40.2
Medtr3g116395 Medicago truncatula HOM05D007227 ORTHO05D002252 6.2e-10 67.4 47 80.9
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 6.2e-10 67.4 83 44.6
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.1e-09 66.6 80 42.5
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 1.1e-09 66.6 60 46.7
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 1.4e-09 66.2 84 45.2
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.4e-09 66.2 80 40.0
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 4.0e-09 64.7 80 45.0
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 5.3e-09 64.3 72 44.4
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 5.3e-09 64.3 75 40.0
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 5.3e-09 64.3 68 45.6
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 5.3e-09 64.3 68 45.6
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 6.9e-09 63.9 94 38.3
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 9.0e-09 63.5 75 46.7
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 9.0e-09 63.5 85 40.0
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 9.0e-09 63.5 84 42.9
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 9.0e-09 63.5 78 41.0
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.2e-08 63.2 74 39.2
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 1.2e-08 63.2 72 47.2
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 1.2e-08 63.2 72 47.2
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 1.2e-08 63.2 71 42.3
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.5e-08 62.8 93 43.0
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.5e-08 62.8 93 43.0
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 1.5e-08 62.8 81 44.4
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 1.5e-08 62.8 84 42.9
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 2.0e-08 62.4 72 45.8
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 2.0e-08 62.4 69 47.8
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 2.0e-08 62.4 72 45.8
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 2.0e-08 62.4 69 47.8
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 2.0e-08 62.4 72 45.8
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 2.0e-08 62.4 72 45.8
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 2.0e-08 62.4 72 45.8
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 2.0e-08 62.4 70 42.9
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 2.6e-08 62.0 73 49.3
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 2.6e-08 62.0 70 47.1
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 2.6e-08 62.0 70 47.1
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 3.4e-08 61.6 87 39.1
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 3.4e-08 61.6 81 35.8
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 3.4e-08 61.6 77 42.9
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.4e-08 61.6 95 38.9
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 3.4e-08 61.6 79 44.3
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 4.4e-08 61.2 73 47.9
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.4e-08 61.2 82 41.5
Sp1g36190 Schrenkiella parvula HOM05D009461 ORTHO05D002252 4.4e-08 61.2 69 46.4
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 5.8e-08 60.8 69 46.4
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 5.8e-08 60.8 69 46.4
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 5.8e-08 60.8 72 44.4
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 7.6e-08 60.5 85 38.8
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.6e-08 60.5 89 38.2
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.3e-07 59.7 86 39.5
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 2.2e-07 58.9 82 40.2
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 2.2e-07 58.9 73 43.8
CARHR039300 Cardamine hirsuta HOM05D009461 ORTHO05D002252 2.2e-07 58.9 72 43.1
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 2.2e-07 58.9 68 44.1
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 2.2e-07 58.9 69 44.9
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.2e-07 58.9 82 41.5
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.2e-07 58.9 89 34.8
C05p34800 Brassica napus HOM05D009461 ORTHO05D002252 2.9e-07 58.5 72 44.4
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 3.8e-07 58.2 68 39.7
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 4.9e-07 57.8 97 38.1
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 4.9e-07 57.8 55 43.6
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.9e-07 57.8 70 42.9
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 6.4e-07 57.4 73 46.6
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 8.4e-07 57.0 86 37.2
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 8.4e-07 57.0 102 34.3
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.1e-06 56.6 82 40.2
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 1.1e-06 56.6 88 34.1
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.1e-06 56.6 52 50.0
HanXRQChr13g0410611 Helianthus annuus HOM05D017364 ORTHO05D002252 1.4e-06 56.2 98 35.7
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.4e-06 56.2 47 57.4
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 1.4e-06 56.2 70 52.9
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.9e-06 55.8 83 36.1
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 1.9e-06 55.8 69 46.4
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.4e-06 55.5 56 42.9
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 2.4e-06 55.5 69 46.4
Lsat_1_v5_gn_7_89361 Lactuca sativa HOM05D007227 ORTHO05D002252 2.4e-06 55.5 52 46.2
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.4e-06 55.5 82 40.2
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.4e-06 55.5 52 50.0
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 3.2e-06 55.1 84 36.9
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.2e-06 55.1 82 39.0
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 3.2e-06 55.1 102 33.3
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.2e-06 54.7 82 40.2
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 5.4e-06 54.3 49 51.0
Hma1.2p1_0066F.1_g036560 Hydrangea macrophylla HOM05D007556 ORTHO05D002252 5.4e-06 54.3 84 35.7
BcaB04g17352 Brassica carinata HOM05D009461 ORTHO05D002252 7.1e-06 53.9 73 41.1
Carub.0001s3849 Capsella rubella HOM05D009461 ORTHO05D002252 7.1e-06 53.9 77 41.6
A08p04090 Brassica napus HOM05D009461 ORTHO05D002252 9.3e-06 53.5 73 41.1
C08p04280 Brassica napus HOM05D009461 ORTHO05D002252 9.3e-06 53.5 73 41.1
BolC8t47231H Brassica oleracea HOM05D009461 ORTHO05D002252 9.3e-06 53.5 73 41.1
BraA08t32434Z Brassica rapa HOM05D009461 ORTHO05D002252 9.3e-06 53.5 73 41.1
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 9.3e-06 53.5 90 38.9
Hma1.2p1_0066F.1_g036590 Hydrangea macrophylla HOM05D007227 ORTHO05D002252 9.3e-06 53.5 46 54.3
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 9.3e-06 53.5 72 34.7
Solyc07g016215.1 Solanum lycopersicum HOM05D007556 ORTHO05D002252 9.3e-06 53.5 81 38.3
PGSC0003DMG400010828 Solanum tuberosum HOM05D007556 ORTHO05D002252 9.3e-06 53.5 63 41.3


User provided reference genes

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