Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38110 Trifolium pratense HOM05D020714 ORTHO05D017062 3.3e-309 1064.3 583 100.0
TPR.G26076 Trifolium pratense HOM05D020714 ORTHO05D017062 3.2e-179 632.5 588 62.1
TPR.G18409 Trifolium pratense HOM05D020714 ORTHO05D017062 4.6e-141 505.8 447 65.1
Medtr1g103230 Medicago truncatula HOM05D001358 ORTHO05D017062 2.5e-123 446.8 592 49.7
TPR.G5550 Trifolium pratense HOM05D000038 ORTHO05D017062 2.2e-103 380.6 249 81.1
Phvul.007G060500 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 1.6e-53 214.9 650 31.2
Glyma.01G236300 Glycine max HOM05D001358 ORTHO05D001154 2.3e-52 211.1 658 31.0
Glyma.11G006900 Glycine max HOM05D001358 ORTHO05D001154 4.9e-50 203.4 658 30.2
Glyma.20G149100 Glycine max HOM05D001358 ORTHO05D001154 1.6e-48 198.4 568 31.2
Ca_24408_v3 Cicer arietinum L. HOM05D001358 ORTHO05D001154 2.0e-48 198.0 571 30.3
VMungo0720G2732 Vigna mungo HOM05D001358 ORTHO05D001154 1.7e-47 194.9 655 29.2
arahy.Tifrunner.gnm1.ann1.VMK2JT Arachis hypogaea HOM05D001358 ORTHO05D001154 2.2e-42 177.9 544 30.5
arahy.Tifrunner.gnm1.ann1.SA7CU8 Arachis hypogaea HOM05D001358 ORTHO05D001154 8.3e-42 176.0 544 30.9
Glyma.10G245500 Glycine max HOM05D001358 ORTHO05D001154 8.3e-42 176.0 569 30.1
LjContig00408g0005420 Lotus japonicus HOM05D001358 ORTHO05D001154 1.8e-41 174.9 649 27.9
VMungo1215G0998 Vigna mungo HOM05D001358 ORTHO05D001154 2.4e-41 174.5 575 30.4
TPR.G14317 Trifolium pratense HOM05D004189 ORTHO05D017062 3.2e-41 174.1 124 75.0
Medtr5g006530 Medicago truncatula HOM05D001358 ORTHO05D001154 3.0e-39 167.5 645 27.6
Lj5g0003828 Lotus japonicus HOM05D001358 ORTHO05D001154 5.2e-36 156.8 585 30.3
Phvul.002G043700 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 3.2e-33 147.5 647 27.4
Psat2g190640 Pisum sativum HOM05D001358 ORTHO05D001154 4.3e-30 137.1 669 25.7
Lalb_Chr05g0211051 Lupinus albus HOM05D001358 ORTHO05D001154 9.5e-30 136.0 555 27.6
Medtr1g103190 Medicago truncatula HOM05D020714 ORTHO05D017062 1.2e-29 135.6 262 40.8
Lalb_Chr09g0319961 Lupinus albus HOM05D001358 ORTHO05D001154 1.6e-29 135.2 634 26.5
TPR.G37873 Trifolium pratense HOM05D001358 ORTHO05D001154 1.8e-28 131.7 543 26.3
Medtr1g103220 Medicago truncatula HOM05D020714 ORTHO05D017062 1.7e-26 125.2 357 34.7
TPR.G40392 Trifolium pratense HOM05D020714 ORTHO05D017062 1.8e-20 105.1 81 75.3
Dinv14032 Davidia involucrata HOM05D001358 ORTHO05D001154 2.3e-20 104.8 671 23.8
TWI53G1527 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 5.8e-19 100.1 575 23.7
Thecc.04G236400 Theobroma cacao HOM05D001358 ORTHO05D001154 1.7e-18 98.6 664 23.5
Prupe.1G019100 Prunus persica HOM05D001358 ORTHO05D001154 2.9e-18 97.8 580 24.5
Potri.008G156100 Populus trichocarpa HOM05D001358 ORTHO05D001154 3.8e-18 97.4 573 27.6
arahy.Tifrunner.gnm1.ann1.HR1TS1 Arachis hypogaea HOM05D001358 ORTHO05D001154 4.9e-18 97.1 544 24.6
FAN12G0899 Fragaria x ananassa HOM05D001358 ORTHO05D001154 4.9e-18 97.1 584 25.7
RcHm_v2.0_Chr4g0387371 Rosa chinensis HOM05D001358 ORTHO05D001154 4.9e-18 97.1 585 25.0
MD16G1197800 Malus domestica HOM05D001358 ORTHO05D001154 1.4e-17 95.5 577 23.6
ECA234G1550 Erigeron canadensis HOM05D001358 ORTHO05D001154 5.4e-17 93.6 542 24.0
TPR.G26118 Trifolium pratense HOM05D001358 ORTHO05D001154 7.1e-17 93.2 301 31.6
Atru.chr4.2387 Acer truncatum HOM05D001358 ORTHO05D001154 9.2e-17 92.8 547 24.9
Atru.chr4.2410 Acer truncatum HOM05D001358 ORTHO05D001154 9.2e-17 92.8 547 24.9
CiPaw.02G122500 Carya illinoinensis HOM05D001358 ORTHO05D001154 9.2e-17 92.8 585 24.3
Dinv44564 Davidia involucrata HOM05D001358 ORTHO05D001154 9.2e-17 92.8 582 24.1
FAN22G2403 Fragaria x ananassa HOM05D001358 ORTHO05D001154 9.2e-17 92.8 587 24.2
MD13G1197800 Malus domestica HOM05D001358 ORTHO05D001154 3.5e-16 90.9 571 23.8
FvH4_4g00820 Fragaria vesca HOM05D001358 ORTHO05D001154 6.0e-16 90.1 556 23.2
arahy.Tifrunner.gnm1.ann1.J1VVLX Arachis hypogaea HOM05D001358 ORTHO05D001154 1.0e-15 89.4 544 24.1
CiPaw.01G197300 Carya illinoinensis HOM05D001358 ORTHO05D001154 1.7e-15 88.6 577 23.1
arahy.Tifrunner.gnm1.ann1.IK82S7 Arachis hypogaea HOM05D001358 ORTHO05D001154 2.3e-15 88.2 548 23.5
FAN17G3066 Fragaria x ananassa HOM05D001358 ORTHO05D001154 3.0e-15 87.8 586 24.6
Psat6g204560 Pisum sativum HOM05D001358 ORTHO05D001154 3.0e-15 87.8 505 25.0
TWI09G1240 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 3.9e-15 87.4 581 23.8
Hma1.2p1_0549F.1_g176810 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 1.1e-14 85.9 533 25.7
Duzib212G0525 Durio zibethinus HOM05D001358 ORTHO05D001154 1.9e-14 85.1 583 23.5
Cfa008460 Carpinus fangiana HOM05D001358 ORTHO05D001154 7.3e-14 83.2 547 24.9
Peaxi162Scf00520g00614 Petunia axillaris HOM05D001358 ORTHO05D001154 7.3e-14 83.2 578 22.1
MSTRG.4051 Avicennia marina HOM05D001358 ORTHO05D001154 9.6e-14 82.8 544 22.8
Actinidia40126 Actinidia chinensis HOM05D001358 ORTHO05D001154 1.6e-13 82.0 554 23.3
TWI73G0388 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 3.6e-13 80.9 540 23.9
TAR365G0419 Trochodendron aralioides HOM05D001358 ORTHO05D001154 3.6e-13 80.9 596 24.5
DCAR_027236 Daucus carota HOM05D001358 ORTHO05D001154 6.2e-13 80.1 539 23.9
GSVIVG01021837001 Vitis vinifera HOM05D001358 ORTHO05D001154 8.1e-13 79.7 533 23.8
Manes.03G174900 Manihot esculenta HOM05D001358 ORTHO05D001154 1.1e-12 79.3 581 24.8
MELO3C006510.2 Cucumis melo HOM05D001358 ORTHO05D001154 1.4e-12 79.0 586 24.1
Gorai.005G044800 Gossypium raimondii HOM05D001358 ORTHO05D001154 1.4e-12 79.0 563 22.9
Hma1.2p1_0602F.1_g187530 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 1.8e-12 78.6 553 24.1
PGR142G0675 Punica granatum HOM05D001358 ORTHO05D001154 1.8e-12 78.6 532 23.7
Sabra08G0118900 Salix brachista HOM05D001358 ORTHO05D001154 2.4e-12 78.2 595 24.7
TAR362G0329 Trochodendron aralioides HOM05D001358 ORTHO05D001154 2.4e-12 78.2 622 22.0
Haze_11214 Corylus avellana HOM05D001358 ORTHO05D001154 3.1e-12 77.8 601 24.1
Gohir.A02G033800 Gossypium hirsutum HOM05D001358 ORTHO05D001154 3.1e-12 77.8 558 23.1
Gohir.D02G040400 Gossypium hirsutum HOM05D001358 ORTHO05D001154 4.0e-12 77.4 559 22.0
Manes.15G031500 Manihot esculenta HOM05D001358 ORTHO05D001154 5.2e-12 77.0 552 24.1
MSTRG.9962 Avicennia marina HOM05D001358 ORTHO05D001154 1.5e-11 75.5 553 23.1
Nn6g34134 Nelumbo nucifera HOM05D001358 ORTHO05D001154 1.5e-11 75.5 588 23.0
Psat6g204520 Pisum sativum HOM05D001358 ORTHO05D001154 1.5e-11 75.5 121 37.2
Psat6g204600 Pisum sativum HOM05D001358 ORTHO05D001154 1.5e-11 75.5 110 42.7
Actinidia23533 Actinidia chinensis HOM05D001358 ORTHO05D001154 2.0e-11 75.1 534 23.8
DCAR_002372 Daucus carota HOM05D001358 ORTHO05D001154 2.6e-11 74.7 559 21.6
Ciclev10004441m.g Citrus clementina HOM05D001358 ORTHO05D001154 4.4e-11 73.9 562 23.5
HanXRQChr10g0294761 Helianthus annuus HOM05D001358 ORTHO05D001154 5.8e-11 73.6 564 21.6
Psat0s3930g0200 Pisum sativum HOM05D001358 ORTHO05D001154 5.8e-11 73.6 194 31.4
Actinidia08472 Actinidia chinensis HOM05D001358 ORTHO05D001154 7.6e-11 73.2 573 22.2
Potri.010G083400 Populus trichocarpa HOM05D001358 ORTHO05D001154 7.6e-11 73.2 592 24.7
QL06p001413 Quercus lobata HOM05D001358 ORTHO05D001154 7.6e-11 73.2 239 28.5
CSS0027734 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 1.3e-10 72.4 562 21.7
Psat7g122280 Pisum sativum HOM05D001358 ORTHO05D001154 1.7e-10 72.0 110 41.8
CsaV3_3G013010 Cucumis sativus L. HOM05D001358 ORTHO05D001154 2.2e-10 71.6 582 23.7
Medtr1g103180 Medicago truncatula HOM05D001358 ORTHO05D001154 2.2e-10 71.6 390 26.9
Cc03_g04130 Coffea canephora HOM05D001358 ORTHO05D001154 2.9e-10 71.2 543 21.5
GSVIVG01018021001 Vitis vinifera HOM05D001358 ORTHO05D001154 2.9e-10 71.2 597 22.8
Rhsim02G0028000 Rhododendron simsii HOM05D001358 ORTHO05D001154 3.8e-10 70.9 620 20.6
COL.COLO4_21540 Corchorus olitorius HOM05D001358 ORTHO05D001154 6.4e-10 70.1 569 22.8
HanXRQChr16g0513781 Helianthus annuus HOM05D001358 ORTHO05D001154 6.4e-10 70.1 524 22.5
Duzib151G0531 Durio zibethinus HOM05D001358 ORTHO05D001154 1.1e-09 69.3 551 21.2
ECA234G2406 Erigeron canadensis HOM05D001358 ORTHO05D001154 1.4e-09 68.9 373 22.0
Sed0026536 Sechium edule HOM05D001358 ORTHO05D001154 1.4e-09 68.9 537 23.6
arahy.Tifrunner.gnm1.ann1.E09QVI Arachis hypogaea HOM05D001358 ORTHO05D001154 1.9e-09 68.6 537 23.3
ClCG05G004950 Citrullus lanatus HOM05D001358 ORTHO05D001154 1.9e-09 68.6 592 23.0
Aqoxy2G03440 Aquilegia oxysepala HOM05D001358 ORTHO05D001154 2.4e-09 68.2 646 21.5
unitig_899.g14872 Utricularia gibba HOM05D001358 ORTHO05D001154 3.2e-09 67.8 527 22.0
Nn1g02402 Nelumbo nucifera HOM05D001358 ORTHO05D001154 4.2e-09 67.4 592 22.5
Oeu042813.3 Olea europaea HOM05D001358 ORTHO05D001154 4.2e-09 67.4 559 22.5
Dinv11533 Davidia involucrata HOM05D001358 ORTHO05D001154 1.2e-08 65.9 543 22.7
Lsat_1_v5_gn_5_104381 Lactuca sativa HOM05D001358 ORTHO05D001154 2.1e-08 65.1 513 22.4
Ah.07g204170 Amaranthus hybridus HOM05D001358 ORTHO05D001154 2.7e-08 64.7 94 39.4
Migut.G00370 Erythranthe guttata HOM05D001358 ORTHO05D001154 6.0e-08 63.5 570 22.3
Sed0021302 Sechium edule HOM05D001358 ORTHO05D001154 7.8e-08 63.2 550 24.0
THA.LOC104808570 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 7.8e-08 63.2 82 39.0
Sopen09g031360 Solanum pennellii HOM05D001358 ORTHO05D001154 1.0e-07 62.8 539 22.6
Cpa.g.sc264.4 Carica papaya HOM05D001358 ORTHO05D001154 1.7e-07 62.0 191 31.4
CARHR148840 Cardamine hirsuta HOM05D001358 ORTHO05D001154 2.3e-07 61.6 41 58.5
CARHR216030 Cardamine hirsuta HOM05D001358 ORTHO05D001154 2.3e-07 61.6 53 50.9
Thhalv10020174m.g Eutrema salsugineum HOM05D001358 ORTHO05D001154 2.3e-07 61.6 96 36.5
PSO170G2064 Papaver somniferum HOM05D001358 ORTHO05D001154 2.3e-07 61.6 540 23.3
Lj6C610G1 Lonicera japonica HOM05D001358 ORTHO05D001154 3.0e-07 61.2 546 21.8
Oeu010307.1 Olea europaea HOM05D001358 ORTHO05D001154 3.0e-07 61.2 59 45.8
EL10Ac4g09092 Beta vulgaris HOM05D001358 ORTHO05D001154 3.9e-07 60.8 90 34.4
Sc13g0004620 Simmondsia chinensis HOM05D001358 ORTHO05D001154 3.9e-07 60.8 547 23.2
AagrBONN_evm.TU.Sc2ySwM_228.2297 Anthoceros agrestis HOM05D001358 ORTHO05D001154 5.1e-07 60.5 35 65.7
Carub.0003s0404 Capsella rubella HOM05D001358 ORTHO05D001154 6.6e-07 60.1 157 34.4
DCAR_024178 Daucus carota HOM05D001358 ORTHO05D001154 6.6e-07 60.1 71 39.4
PGSC0003DMG400032257 Solanum tuberosum HOM05D001358 ORTHO05D001154 6.6e-07 60.1 538 21.7
HPP92_028014 Vanilla planifolia HOM05D001358 ORTHO05D001154 6.6e-07 60.1 78 37.2
CARHR091320 Cardamine hirsuta HOM05D001777 ORTHO05D001809 8.7e-07 59.7 40 60.0
CsaV3_2G013550 Cucumis sativus L. HOM05D001358 ORTHO05D001154 8.7e-07 59.7 91 42.9
AL3G37100 Arabidopsis lyrata HOM05D001358 ORTHO05D001154 1.1e-06 59.3 45 55.6
CAN.G1402.8 Capsicum annuum HOM05D001358 ORTHO05D001154 1.1e-06 59.3 41 58.5
Eucgr.B01031 Eucalyptus grandis HOM05D001358 ORTHO05D001154 1.1e-06 59.3 54 50.0
Lj3A729G50 Lonicera japonica HOM05D001358 ORTHO05D001154 1.1e-06 59.3 45 55.6
Solyc09g082500.4 Solanum lycopersicum HOM05D001358 ORTHO05D001154 1.1e-06 59.3 539 22.1
THA.LOC104803136 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 1.1e-06 59.3 48 54.2
THA.LOC104827552 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 1.1e-06 59.3 77 40.3
TWI12G1411 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 1.1e-06 59.3 84 33.3
CANSAT78G1873 Cannabis sativa HOM05D001358 ORTHO05D001154 1.5e-06 58.9 541 22.9
Rhsim04G0199300 Rhododendron simsii HOM05D001358 ORTHO05D001154 1.5e-06 58.9 551 21.4
SalBow3G1593 Salvia bowleyana HOM05D001358 ORTHO05D001154 1.5e-06 58.9 48 52.1
SalBow6G5001 Salvia bowleyana HOM05D001358 ORTHO05D001154 1.5e-06 58.9 48 52.1
unitig_748.g7301 Utricularia gibba HOM05D001358 ORTHO05D001154 1.5e-06 58.9 48 52.1
Dinv17768 Davidia involucrata HOM05D001358 ORTHO05D001154 1.9e-06 58.5 48 50.0
Thhalv10022166m.g Eutrema salsugineum HOM05D001358 ORTHO05D001154 1.9e-06 58.5 66 45.5
Hund06954 Selenicereus undatus HOM05D001358 ORTHO05D001154 1.9e-06 58.5 94 33.0
Sc19g0004020 Simmondsia chinensis HOM05D001358 ORTHO05D001154 1.9e-06 58.5 94 34.0
AT3G22780 Arabidopsis thaliana HOM05D001358 ORTHO05D001154 2.5e-06 58.2 96 39.6
COL.COLO4_12886 Corchorus olitorius HOM05D001358 ORTHO05D001154 2.5e-06 58.2 64 37.5
Lj5g0003410 Lotus japonicus HOM05D001358 ORTHO05D001154 2.5e-06 58.2 48 50.0
Pp3c9_7400 Physcomitrium patens HOM05D001358 ORTHO05D001154 2.5e-06 58.2 73 38.4
Sabra01G0138200 Salix brachista HOM05D001358 ORTHO05D001154 2.5e-06 58.2 48 50.0
THA.LOC104818134 Tarenaya hassleriana HOM05D001777 ORTHO05D001809 2.5e-06 58.2 39 64.1
AL7G41150 Arabidopsis lyrata HOM05D001358 ORTHO05D001154 3.3e-06 57.8 42 57.1
AT4G14770 Arabidopsis thaliana HOM05D001358 ORTHO05D001154 3.3e-06 57.8 42 57.1
BcaB06g26393 Brassica carinata HOM05D001358 ORTHO05D001154 3.3e-06 57.8 41 58.5
Carub.0007s2737 Capsella rubella HOM05D001358 ORTHO05D001154 3.3e-06 57.8 42 57.1
QL06p001419 Quercus lobata HOM05D001358 ORTHO05D001154 3.3e-06 57.8 203 31.0
Sp3g20480 Schrenkiella parvula HOM05D001358 ORTHO05D001154 3.3e-06 57.8 41 58.5
SMO174G0066 Selaginella moellendorffii HOM05D001358 ORTHO05D001154 3.3e-06 57.8 61 44.3
VMungo0647G2453 Vigna mungo HOM05D001358 ORTHO05D001154 3.3e-06 57.8 72 40.3
Actinidia14619 Actinidia chinensis HOM05D001358 ORTHO05D001154 4.3e-06 57.4 69 42.0
A01p22800 Brassica napus HOM05D001358 ORTHO05D001154 4.3e-06 57.4 41 58.5
C01p28370 Brassica napus HOM05D001358 ORTHO05D001154 4.3e-06 57.4 41 58.5
BolC1t02766H Brassica oleracea HOM05D001358 ORTHO05D001154 4.3e-06 57.4 41 58.5
BraA01t02192Z Brassica rapa HOM05D001358 ORTHO05D001154 4.3e-06 57.4 41 58.5
MELO3C014295.2 Cucumis melo HOM05D001358 ORTHO05D001154 4.3e-06 57.4 90 43.3
Thhalv10024624m.g Eutrema salsugineum HOM05D001358 ORTHO05D001154 4.3e-06 57.4 41 58.5
Oeu058964.1 Olea europaea HOM05D001358 ORTHO05D001154 4.3e-06 57.4 44 54.5
Phvul.001G052500 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 4.3e-06 57.4 48 50.0
Potri.001G173600 Populus trichocarpa HOM05D001358 ORTHO05D001154 4.3e-06 57.4 48 52.1
Prupe.1G473800 Prunus persica HOM05D001358 ORTHO05D001154 4.3e-06 57.4 132 28.8
Atru.chr2.777 Acer truncatum HOM05D001358 ORTHO05D001154 5.6e-06 57.0 535 22.2
CARHR098620 Cardamine hirsuta HOM05D001358 ORTHO05D001154 5.6e-06 57.0 94 35.1
Mapoly0023s0118 Marchantia polymorpha HOM05D001358 ORTHO05D001154 5.6e-06 57.0 59 47.5
Potri.013G038301 Populus trichocarpa HOM05D001358 ORTHO05D001154 5.6e-06 57.0 48 50.0
vmacro15363 Vaccinium macrocarpon HOM05D001358 ORTHO05D001154 5.6e-06 57.0 536 21.3
ATR0665G509 Amborella trichopoda HOM05D001358 ORTHO05D001154 7.3e-06 56.6 51 52.9
Haze_16355 Corylus avellana HOM05D001777 ORTHO05D001809 7.3e-06 56.6 66 43.9
Duzib192G0517 Durio zibethinus HOM05D001358 ORTHO05D001154 7.3e-06 56.6 71 36.6
ECA246G3351 Erigeron canadensis HOM05D001358 ORTHO05D001154 7.3e-06 56.6 138 31.9
SEGI_26140 Sequoiadendron giganteum HOM05D001358 ORTHO05D001154 7.3e-06 56.6 63 42.9
Aa31LG5G15240 Aethionema arabicum HOM05D001358 ORTHO05D001154 9.6e-06 56.2 77 44.2
MSTRG.21868 Avicennia marina HOM05D001358 ORTHO05D001154 9.6e-06 56.2 41 56.1
A01p37940 Brassica napus HOM05D001777 ORTHO05D001809 9.6e-06 56.2 40 62.5
BraA01t03854Z Brassica rapa HOM05D001777 ORTHO05D001809 9.6e-06 56.2 40 62.5
Carub.0003s2289 Capsella rubella HOM05D001358 ORTHO05D001154 9.6e-06 56.2 49 53.1
AUR62033646 Chenopodium quinoa HOM05D001358 ORTHO05D001154 9.6e-06 56.2 48 50.0
PRCOL_00005835 Prasinoderma coloniale HOM05D001777 ORTHO05D001809 9.6e-06 56.2 35 62.9


User provided reference genes

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