Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 7.5e-21 102.8 49 100.0
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-19 99.0 49 93.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 5.9e-18 93.2 49 91.8
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.5e-16 87.8 49 85.7
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 9.5e-16 85.9 49 81.6
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.1e-15 84.7 49 79.6
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 4.0e-14 80.5 49 77.6
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 6.8e-14 79.7 49 79.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 8.9e-14 79.3 49 73.5
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.2e-13 79.0 49 73.5
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.5e-13 78.6 49 75.5
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 4.4e-13 77.0 49 75.5
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 7.5e-13 76.3 43 81.4
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.3e-12 75.5 44 77.3
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 3.7e-12 73.9 46 73.9
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 6.4e-12 73.2 44 72.7
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 6.4e-12 73.2 47 76.6
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.9e-11 71.6 49 67.3
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.2e-11 70.9 41 80.5
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.1e-11 70.5 48 64.6
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 4.1e-11 70.5 45 68.9
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 5.4e-11 70.1 44 72.7
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.4e-11 70.1 47 68.1
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 7.0e-11 69.7 44 70.5
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 7.0e-11 69.7 48 62.5
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 9.2e-11 69.3 46 65.2
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 9.2e-11 69.3 48 64.6
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.2e-10 68.9 46 67.4
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.6e-10 68.6 44 70.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.6e-10 68.6 45 68.9
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.6e-10 68.6 47 63.8
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.0e-10 68.2 44 68.2
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.0e-10 68.2 44 68.2
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 2.0e-10 68.2 48 64.6
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.0e-10 68.2 43 67.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.0e-10 68.2 47 68.1
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.0e-10 68.2 47 68.1
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.7e-10 67.8 46 67.4
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 3.5e-10 67.4 44 68.2
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 4.6e-10 67.0 45 62.2
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.6e-10 67.0 44 68.2
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 4.6e-10 67.0 47 63.8
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.6e-10 67.0 45 66.7
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 6.0e-10 66.6 46 67.4
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.0e-10 66.6 46 67.4
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 7.8e-10 66.2 47 61.7
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 7.8e-10 66.2 48 64.6
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-09 65.9 46 65.2
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.3e-09 65.5 47 61.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.3e-09 64.7 44 65.9
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.3e-09 64.7 48 58.3
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 2.3e-09 64.7 48 62.5
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.0e-09 64.3 41 70.7
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 3.0e-09 64.3 45 57.8
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 3.0e-09 64.3 44 65.9
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 3.0e-09 64.3 44 65.9
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 3.0e-09 64.3 44 65.9
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 3.0e-09 64.3 39 71.8
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 3.9e-09 63.9 47 61.7
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 3.9e-09 63.9 48 58.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 5.0e-09 63.5 45 60.0
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 5.0e-09 63.5 44 65.9
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 5.0e-09 63.5 48 60.4
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 5.0e-09 63.5 48 64.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.0e-09 63.5 48 64.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 6.6e-09 63.2 48 60.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.6e-09 62.8 47 63.8
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 8.6e-09 62.8 44 65.9
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.5e-08 62.0 48 64.6
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.5e-08 62.0 48 60.4
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.5e-08 62.0 48 58.3
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.5e-08 62.0 45 64.4
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.9e-08 61.6 46 60.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.9e-08 61.6 48 60.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.5e-08 61.2 46 60.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 3.3e-08 60.8 44 61.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 3.3e-08 60.8 48 62.5
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 3.3e-08 60.8 44 63.6
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.3e-08 60.5 48 62.5
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.3e-08 60.5 43 67.4
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 4.3e-08 60.5 45 60.0
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.6e-08 60.1 43 67.4
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.6e-08 60.1 43 65.1
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.6e-08 60.1 43 65.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.6e-08 60.1 46 60.9
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 5.6e-08 60.1 43 65.1
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 9.5e-08 59.3 48 60.4
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 9.5e-08 59.3 44 59.1
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.2e-07 58.9 43 62.8
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.1e-07 58.2 48 60.4
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.1e-07 58.2 43 60.5
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.1e-07 58.2 43 60.5
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.1e-07 58.2 48 52.1
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 2.8e-07 57.8 48 60.4
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 2.8e-07 57.8 48 60.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.8e-07 57.8 49 53.1
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 2.8e-07 57.8 44 59.1
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.8e-07 57.8 44 56.8
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 3.6e-07 57.4 44 59.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 4.7e-07 57.0 44 61.4
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 4.7e-07 57.0 35 77.1
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.7e-07 57.0 43 58.1
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 4.7e-07 57.0 38 65.8
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.7e-07 57.0 34 70.6
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 6.2e-07 56.6 49 53.1
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 6.2e-07 56.6 44 56.8
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 8.1e-07 56.2 43 62.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 8.1e-07 56.2 44 59.1
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 8.1e-07 56.2 48 58.3
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 8.1e-07 56.2 41 63.4
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 3.1e-06 54.3 45 57.8
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 4.0e-06 53.9 45 48.9
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 5.2e-06 53.5 48 54.2
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 5.2e-06 53.5 48 54.2
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 8.9e-06 52.8 53 50.9


User provided reference genes

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