Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 8.0e-76 287.0 140 100.0
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 8.3e-73 276.9 138 96.4
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 1.8e-43 179.5 135 67.4
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 3.3e-37 158.7 137 57.7
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 9.6e-37 157.1 137 57.7
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 1.3e-36 156.8 136 57.4
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 3.6e-36 155.2 141 53.9
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 4.8e-36 154.8 136 55.1
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 8.1e-36 154.1 144 53.5
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 1.1e-35 153.7 140 55.7
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 1.8e-35 152.9 135 57.8
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 3.1e-35 152.1 137 54.7
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 4.0e-35 151.8 137 54.0
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 4.0e-35 151.8 140 51.4
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 2.0e-34 149.4 139 51.8
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 5.8e-34 147.9 143 51.0
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 5.8e-34 147.9 141 53.9
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 9.9e-34 147.1 143 50.3
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 1.3e-33 146.7 145 51.0
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 1.7e-33 146.4 140 48.6
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 1.7e-33 146.4 141 47.5
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 3.8e-33 145.2 136 52.2
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 4.9e-33 144.8 139 51.8
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 6.4e-33 144.4 134 54.5
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 8.4e-33 144.1 139 48.9
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 1.1e-32 143.7 134 52.2
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 1.1e-32 143.7 134 53.7
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 1.4e-32 143.3 139 48.9
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 1.4e-32 143.3 138 51.4
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 7.1e-32 141.0 135 51.1
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 7.1e-32 141.0 134 52.2
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 9.3e-32 140.6 140 48.6
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 1.2e-31 140.2 137 48.2
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 1.2e-31 140.2 134 53.0
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 1.2e-31 140.2 134 51.5
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 1.6e-31 139.8 134 52.2
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 1.6e-31 139.8 134 51.5
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 1.6e-31 139.8 134 50.7
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 1.6e-31 139.8 134 53.0
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 2.1e-31 139.4 134 52.2
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 2.7e-31 139.0 137 50.4
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 2.7e-31 139.0 140 48.6
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 3.5e-31 138.7 134 51.5
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 3.5e-31 138.7 145 51.0
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 3.5e-31 138.7 140 48.6
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 3.5e-31 138.7 140 48.6
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 3.5e-31 138.7 139 48.9
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 4.6e-31 138.3 139 47.5
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 1.3e-30 136.7 137 50.4
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 5.1e-30 134.8 137 48.9
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 8.7e-30 134.0 145 49.0
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 1.1e-29 133.7 138 50.7
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 4.3e-29 131.7 137 48.2
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 4.3e-29 131.7 139 47.5
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 4.3e-29 131.7 143 49.7
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 5.6e-29 131.3 143 46.2
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 5.6e-29 131.3 137 48.2
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 5.6e-29 131.3 141 46.8
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 7.4e-29 131.0 140 46.4
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 9.6e-29 130.6 135 47.4
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 1.3e-28 130.2 133 49.6
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 2.1e-28 129.4 137 46.0
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 2.1e-28 129.4 137 47.4
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 2.8e-28 129.0 137 48.2
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 3.6e-28 128.6 137 48.9
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 4.8e-28 128.3 134 45.5
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 4.8e-28 128.3 138 47.1
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 4.8e-28 128.3 140 46.4
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 8.1e-28 127.5 140 45.7
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 1.4e-27 126.7 140 45.0
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 3.1e-27 125.6 139 48.2
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 4.0e-27 125.2 137 46.7
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 6.9e-27 124.4 140 46.4
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 1.5e-26 123.2 134 47.8
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 2.0e-26 122.9 135 47.4
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 2.6e-26 122.5 133 46.6
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 2.6e-26 122.5 143 44.1
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 2.6e-26 122.5 134 47.8
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 3.4e-26 122.1 171 43.3
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.7e-25 119.8 110 52.7
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 2.2e-25 119.4 144 43.8
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 2.9e-25 119.0 135 43.0
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 4.9e-25 118.2 137 41.6
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 4.9e-25 118.2 143 43.4
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 1.1e-24 117.1 127 48.0
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.4e-24 116.7 132 47.0
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 2.4e-24 115.9 136 45.6
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 4.2e-24 115.2 135 43.7
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 7.1e-24 114.4 162 41.4
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 2.1e-23 112.8 163 41.1
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 4.6e-23 111.7 134 44.0
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 1.3e-22 110.2 133 45.1
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 2.3e-22 109.4 107 49.5
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 5.1e-22 108.2 135 41.5
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 1.5e-21 106.7 114 44.7
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 1.5e-21 106.7 111 48.6
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 9.6e-21 104.0 134 41.0
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 3.7e-20 102.1 139 39.6
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 3.7e-20 102.1 137 40.1
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 3.7e-20 102.1 104 48.1
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.1e-20 100.9 137 38.7
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 2.4e-19 99.4 100 48.0
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 4.0e-19 98.6 105 46.7
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 6.9e-19 97.8 127 40.9
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 9.0e-19 97.4 135 34.8
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 2.0e-18 96.3 108 42.6
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.0e-18 96.3 106 46.2
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 2.0e-18 96.3 135 35.6
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 4.5e-18 95.1 102 44.1
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 1.4e-16 90.1 128 40.6
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 4.6e-15 85.1 129 39.5
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 4.3e-13 78.6 87 44.8
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 1.3e-12 77.0 98 39.8
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 6.3e-12 74.7 138 36.2
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 1.4e-11 73.6 101 37.6
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 6.9e-11 71.2 59 54.2
CiPaw.06G173400 Carya illinoinensis HOM05D000986 ORTHO05D000794 7.2e-08 61.2 133 28.6
Lsat_1_v5_gn_7_76640 Lactuca sativa HOM05D000986 ORTHO05D000794 2.1e-07 59.7 133 29.3
Nitab4.5_0000787g0270 Nicotiana tabacum HOM05D000986 ORTHO05D000794 3.6e-07 58.9 133 27.8
Oeu045932.1 Olea europaea HOM05D000986 ORTHO05D000794 4.6e-07 58.5 134 26.9
Oeu045926.1 Olea europaea HOM05D000986 ORTHO05D000794 6.1e-07 58.2 134 26.1
Lsat_1_v5_gn_7_75940 Lactuca sativa HOM05D000986 ORTHO05D000794 1.3e-06 57.0 133 27.1
Nitab4.5_0007295g0030 Nicotiana tabacum HOM05D000986 ORTHO05D000794 2.3e-06 56.2 133 27.8
Peaxi162Scf00011g01126 Petunia axillaris HOM05D000986 ORTHO05D000794 2.3e-06 56.2 133 27.8
Peaxi162Scf00011g01219 Petunia axillaris HOM05D000986 ORTHO05D000794 2.3e-06 56.2 133 27.8
Ciclev10002584m.g Citrus clementina HOM05D000986 ORTHO05D000794 3.9e-06 55.5 133 27.1
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 3.9e-06 55.5 57 45.6
Nitab4.5_0000787g0200 Nicotiana tabacum HOM05D000986 ORTHO05D000794 6.7e-06 54.7 133 27.8
PGSC0003DMG400024920 Solanum tuberosum HOM05D000986 ORTHO05D000794 6.7e-06 54.7 133 24.8


User provided reference genes

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