Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37964 Trifolium pratense HOM05D006690 ORTHO05D008541 9.4e-133 476.9 242 100.0
Medtr5g008750 Medicago truncatula HOM05D006690 ORTHO05D008541 5.0e-110 401.4 276 78.3
Psat0s3069g0040 Pisum sativum HOM05D006690 ORTHO05D008541 4.7e-108 394.8 280 76.1
Ca_24481_v3 Cicer arietinum L. HOM05D006690 ORTHO05D008541 6.0e-103 377.9 281 74.0
VMungo1215G2418 Vigna mungo HOM05D006690 ORTHO05D008541 4.6e-87 325.1 278 64.4
LjContig00222g0026492 Lotus japonicus HOM05D006690 ORTHO05D008541 3.0e-86 322.4 283 64.0
Glyma.01G231900 Glycine max HOM05D006690 ORTHO05D008541 6.6e-86 321.2 270 63.3
arahy.Tifrunner.gnm1.ann1.PSIH1X Arachis hypogaea HOM05D006690 ORTHO05D008541 3.3e-85 318.9 323 58.2
AUR62022402 Chenopodium quinoa HOM05D006690 ORTHO05D008541 6.2e-84 314.7 286 62.2
AUR62043541 Chenopodium quinoa HOM05D006690 ORTHO05D008541 9.0e-83 310.8 232 69.4
CSS0006473 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 1.2e-82 310.5 234 69.2
CSS0045264 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 1.2e-82 310.5 234 69.2
CiPaw.03G016600 Carya illinoinensis HOM05D006690 ORTHO05D008541 2.0e-82 309.7 249 63.5
CANSAT21G2558 Cannabis sativa HOM05D006690 ORTHO05D008541 2.6e-82 309.3 232 68.1
Dinv09402 Davidia involucrata HOM05D006690 ORTHO05D008541 4.4e-82 308.5 240 68.3
Ah.05g168760 Amaranthus hybridus HOM05D006690 ORTHO05D008541 5.8e-82 308.1 270 62.2
GSVIVG01036428001 Vitis vinifera HOM05D006690 ORTHO05D008541 5.8e-82 308.1 229 67.7
TAR628G1481 Trochodendron aralioides HOM05D006690 ORTHO05D008541 9.9e-82 307.4 229 68.6
Haze_13934 Corylus avellana HOM05D006690 ORTHO05D008541 2.2e-81 306.2 283 59.7
MELO3C022193.2 Cucumis melo HOM05D006690 ORTHO05D008541 2.2e-81 306.2 227 68.7
MD15G1137600 Malus domestica HOM05D006690 ORTHO05D008541 2.2e-81 306.2 278 59.4
Hma1.2p1_0442F.1_g153970 Hydrangea macrophylla HOM05D006690 ORTHO05D008541 2.9e-81 305.8 246 66.3
QL09p003717 Quercus lobata HOM05D006690 ORTHO05D008541 2.9e-81 305.8 274 60.6
Duzib177G0086 Durio zibethinus HOM05D006690 ORTHO05D008541 3.8e-81 305.4 245 65.3
EL10Ac1g01712 Beta vulgaris HOM05D006690 ORTHO05D008541 4.9e-81 305.1 280 61.4
Potri.019G073900 Populus trichocarpa HOM05D006690 ORTHO05D008541 4.9e-81 305.1 244 63.5
ClCG08G000730 Citrullus lanatus HOM05D006690 ORTHO05D008541 8.4e-81 304.3 226 69.0
Lj9A700T90 Lonicera japonica HOM05D006690 ORTHO05D008541 8.4e-81 304.3 227 69.6
Lalb_Chr16g0376791 Lupinus albus HOM05D006690 ORTHO05D008541 8.4e-81 304.3 268 63.4
Cfa008102 Carpinus fangiana HOM05D006690 ORTHO05D008541 1.1e-80 303.9 295 58.3
Sopen11g018800 Solanum pennellii HOM05D006690 ORTHO05D008541 1.9e-80 303.1 266 62.8
Cpa.g.sc21.64 Carica papaya HOM05D006690 ORTHO05D008541 2.4e-80 302.8 268 60.1
CARHR291180 Cardamine hirsuta HOM05D006690 ORTHO05D008541 3.2e-80 302.4 226 67.7
Solyc11g042640.2 Solanum lycopersicum HOM05D006690 ORTHO05D008541 3.2e-80 302.4 266 62.8
COL.COLO4_14973 Corchorus olitorius HOM05D006690 ORTHO05D008541 4.2e-80 302.0 233 67.8
CsaV3_5G040160 Cucumis sativus L. HOM05D006690 ORTHO05D008541 4.2e-80 302.0 242 65.7
MBI06_g35694_MAGBIO Magnolia biondii HOM05D006690 ORTHO05D008541 4.2e-80 302.0 287 58.9
Prupe.1G128000 Prunus persica HOM05D006690 ORTHO05D008541 4.2e-80 302.0 238 65.5
AT1G71500 Arabidopsis thaliana HOM05D006690 ORTHO05D008541 1.2e-79 300.4 226 66.8
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 1.2e-79 300.4 228 68.0
BraA07t31340Z Brassica rapa HOM05D006690 ORTHO05D008541 1.2e-79 300.4 228 68.0
Manes.02G208400 Manihot esculenta HOM05D006690 ORTHO05D008541 1.6e-79 300.1 230 66.1
Nitab4.5_0004761g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 1.6e-79 300.1 233 67.4
Nitab4.5_0010632g0010 Nicotiana tabacum HOM05D006690 ORTHO05D008541 1.6e-79 300.1 233 67.4
Gohir.A05G252900 Gossypium hirsutum HOM05D006690 ORTHO05D008541 3.5e-79 298.9 232 66.8
Gohir.D05G254800 Gossypium hirsutum HOM05D006690 ORTHO05D008541 3.5e-79 298.9 232 66.8
AL2G31160 Arabidopsis lyrata HOM05D006690 ORTHO05D008541 4.6e-79 298.5 226 66.8
Nn5g27416 Nelumbo nucifera HOM05D006690 ORTHO05D008541 4.6e-79 298.5 242 65.3
arahy.Tifrunner.gnm1.ann1.M9KTRI Arachis hypogaea HOM05D006690 ORTHO05D008541 6.0e-79 298.1 367 50.4
RcHm_v2.0_Chr2g0123251 Rosa chinensis HOM05D006690 ORTHO05D008541 6.0e-79 298.1 234 65.4
Thhalv10018960m.g Eutrema salsugineum HOM05D006690 ORTHO05D008541 7.9e-79 297.7 295 57.6
Gorai.009G266300 Gossypium raimondii HOM05D006690 ORTHO05D008541 7.9e-79 297.7 264 61.7
Eucgr.F02968 Eucalyptus grandis HOM05D006690 ORTHO05D008541 1.0e-78 297.4 238 63.9
Peaxi162Scf00078g00341 Petunia axillaris HOM05D006690 ORTHO05D008541 1.3e-78 297.0 231 67.1
PGR042G1281 Punica granatum HOM05D006690 ORTHO05D008541 1.3e-78 297.0 280 58.9
PGSC0003DMG400017809 Solanum tuberosum HOM05D006690 ORTHO05D008541 1.3e-78 297.0 266 60.9
CDE05G2117 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 1.7e-78 296.6 232 65.5
Migut.C01361 Erythranthe guttata HOM05D006690 ORTHO05D008541 1.7e-78 296.6 235 65.5
Rhsim12G0004800 Rhododendron simsii HOM05D006690 ORTHO05D008541 1.7e-78 296.6 217 69.1
SalBow7G1428 Salvia bowleyana HOM05D006690 ORTHO05D008541 1.7e-78 296.6 226 65.9
Atru.chr13.2467 Acer truncatum HOM05D006690 ORTHO05D008541 2.3e-78 296.2 293 57.7
Carub.0002s1836 Capsella rubella HOM05D006690 ORTHO05D008541 2.3e-78 296.2 227 66.5
CAN.G83.1 Capsicum annuum HOM05D006690 ORTHO05D008541 3.0e-78 295.8 275 60.0
BcaC08g46585 Brassica carinata HOM05D006690 ORTHO05D008541 3.9e-78 295.4 263 60.5
C06p45640 Brassica napus HOM05D006690 ORTHO05D008541 3.9e-78 295.4 263 60.5
Sp5g26650 Schrenkiella parvula HOM05D006690 ORTHO05D008541 3.9e-78 295.4 226 67.3
Thecc.08G174200 Theobroma cacao HOM05D006690 ORTHO05D008541 3.9e-78 295.4 244 63.5
Actinidia23025 Actinidia chinensis HOM05D006690 ORTHO05D008541 5.1e-78 295.0 226 67.7
Sc02g0003840 Simmondsia chinensis HOM05D006690 ORTHO05D008541 6.6e-78 294.7 237 64.6
TWI75G0001 Tripterygium wilfordii HOM05D006690 ORTHO05D008541 6.6e-78 294.7 267 60.7
MSTRG.1587 Avicennia marina HOM05D006690 ORTHO05D008541 4.3e-77 292.0 279 58.8
Manes.18G119400 Manihot esculenta HOM05D006690 ORTHO05D008541 7.3e-77 291.2 231 64.5
THA.LOC104800085 Tarenaya hassleriana HOM05D006690 ORTHO05D008541 7.3e-77 291.2 226 65.5
Sed0015713 Sechium edule HOM05D006690 ORTHO05D008541 1.6e-76 290.0 225 65.8
PSO017G7034 Papaver somniferum HOM05D006690 ORTHO05D008541 3.6e-76 288.9 227 63.4
PSO170G2989 Papaver somniferum HOM05D006690 ORTHO05D008541 3.6e-76 288.9 226 63.7
FAN23G3093 Fragaria x ananassa HOM05D006690 ORTHO05D008541 4.8e-76 288.5 280 57.5
FAN26G2368 Fragaria x ananassa HOM05D006690 ORTHO05D008541 4.8e-76 288.5 280 57.5
FAN28G2783 Fragaria x ananassa HOM05D006690 ORTHO05D008541 4.8e-76 288.5 280 57.5
SGA_v2.0_scaffold24G10633 Striga asiatica HOM05D006690 ORTHO05D008541 4.8e-76 288.5 240 62.9
Aa31LG4G9090 Aethionema arabicum HOM05D006690 ORTHO05D008541 6.2e-76 288.1 301 56.5
Aqoxy5G00849 Aquilegia oxysepala HOM05D006690 ORTHO05D008541 6.2e-76 288.1 283 57.6
HanXRQChr04g0102641 Helianthus annuus HOM05D006690 ORTHO05D008541 8.1e-76 287.7 259 60.2
ECA247G0737 Erigeron canadensis HOM05D006690 ORTHO05D008541 1.4e-75 287.0 230 63.5
Ciclev10021386m.g Citrus clementina HOM05D006690 ORTHO05D008541 2.4e-75 286.2 232 63.4
FAN19G1869 Fragaria x ananassa HOM05D006690 ORTHO05D008541 3.1e-75 285.8 280 57.1
Sabra19G0085000 Salix brachista HOM05D006690 ORTHO05D008541 4.0e-75 285.4 308 53.2
SGA_v2.0_scaffold118G32591 Striga asiatica HOM05D006690 ORTHO05D008541 4.0e-75 285.4 233 64.4
DCAR_017362 Daucus carota HOM05D006690 ORTHO05D008541 6.9e-75 284.6 278 55.8
ATR1089G004 Amborella trichopoda HOM05D006690 ORTHO05D008541 1.5e-74 283.5 236 61.9
Cc10_g09110 Coffea canephora HOM05D006690 ORTHO05D008541 2.0e-74 283.1 209 67.5
Phvul.002G035200 Phaseolus vulgaris HOM05D006690 ORTHO05D008541 2.9e-73 279.3 254 60.2
HPP92_019451 Vanilla planifolia HOM05D006690 ORTHO05D008541 3.8e-73 278.9 236 60.6
unitig_8.g4892 Utricularia gibba HOM05D006690 ORTHO05D008541 1.4e-72 276.9 240 62.5
Zm00001eb142810 Zea mays HOM05D006690 ORTHO05D008541 2.4e-72 276.2 245 59.6
Lsat_1_v5_gn_1_25180 Lactuca sativa HOM05D006690 ORTHO05D008541 5.4e-72 275.0 275 56.7
Oeu023205.1 Olea europaea HOM05D006690 ORTHO05D008541 1.2e-71 273.9 290 54.8
SEGI_25869 Sequoiadendron giganteum HOM05D006690 ORTHO05D008541 1.9e-69 266.5 279 52.3
Os11g0242400 Oryza sativa ssp. japonica HOM05D006690 ORTHO05D008541 2.2e-65 253.1 230 57.4
Pp3c6_9090 Physcomitrium patens HOM05D006690 ORTHO05D008541 6.2e-60 235.0 213 51.6
CDE05G1864 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 2.6e-58 229.6 140 77.9
CDE05G3037 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 3.8e-57 225.7 213 58.2
Mapoly0043s0097 Marchantia polymorpha HOM05D006690 ORTHO05D008541 4.2e-56 222.2 232 48.3
vmacro22748 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 2.1e-55 219.9 242 54.1
SMO139G0118 Selaginella moellendorffii HOM05D006690 ORTHO05D008541 3.5e-55 219.2 202 53.5
FvH4_1g25280 Fragaria vesca HOM05D006690 ORTHO05D008541 1.3e-54 217.2 183 60.7
AagrBONN_evm.TU.Sc2ySwM_228.501 Anthoceros agrestis HOM05D006690 ORTHO05D008541 2.2e-52 209.9 215 50.7
Nitab4.5_0003013g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 8.8e-46 188.0 209 52.6
Cre09.g411200 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D008541 9.4e-32 141.4 146 48.6
MCO14G230 Micromonas commoda HOM05D006690 ORTHO05D008541 2.1e-31 140.2 160 46.2
vmacro00956 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 2.7e-31 139.8 264 40.2
PRCOL_00001119 Prasinoderma coloniale HOM05D006690 ORTHO05D008541 7.5e-29 131.7 119 51.3
QL09p003724 Quercus lobata HOM05D006690 ORTHO05D008541 4.5e-26 122.5 135 51.9
SGA_v2.0_scaffold7G03910 Striga asiatica HOM05D006690 ORTHO05D008541 1.9e-24 117.1 83 69.9
unitig_578.g16121 Utricularia gibba HOM05D006690 ORTHO05D008541 2.7e-23 113.2 131 43.5
QL09p003744 Quercus lobata HOM05D006690 ORTHO05D008541 8.5e-17 91.7 52 86.5
GSVIVG01034644001 Vitis vinifera HOM05D006690 ORTHO05D008541 2.6e-13 80.1 55 74.5
MCO05G575 Micromonas commoda HOM05D006690 ORTHO05D044287 1.0e-06 58.2 80 40.0
GSVIVG01036421001 Vitis vinifera HOM05D006690 ORTHO05D008541 1.8e-06 57.4 88 46.6


User provided reference genes

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