Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.8e-197 691.8 364 100.0
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 8.3e-157 557.4 364 79.4
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.1e-153 547.0 364 77.5
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 3.1e-148 528.9 364 75.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 6.8e-135 484.6 364 70.3
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 2.0e-134 483.0 364 69.2
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.9e-132 476.5 365 68.5
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 7.0e-132 474.6 365 69.9
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 6.0e-131 471.5 364 67.6
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.1e-127 460.7 364 66.5
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 5.2e-127 458.4 365 64.9
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 2.0e-126 456.4 365 64.7
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.5e-118 430.3 366 59.8
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 5.8e-118 428.3 364 61.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 7.6e-118 427.9 365 59.7
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 9.9e-118 427.6 364 61.0
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.9e-117 426.0 364 59.9
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 4.9e-117 425.2 366 59.8
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.4e-116 422.9 364 60.4
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 4.2e-116 422.2 365 59.2
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 5.4e-116 421.8 366 59.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.1e-116 421.4 365 60.8
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 3.5e-115 419.1 365 60.0
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 4.6e-115 418.7 366 58.2
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.7e-114 416.8 365 58.6
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 7.3e-113 411.4 364 57.4
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-112 410.6 364 57.4
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.8e-112 409.5 364 57.7
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.8e-111 406.8 368 57.9
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 5.3e-111 405.2 364 58.2
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-110 404.1 371 57.4
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-110 404.1 379 55.7
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.7e-109 400.2 364 57.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.2e-109 399.8 365 57.0
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.4e-109 397.9 364 56.3
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.1e-108 397.5 364 54.7
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 1.6e-107 393.7 364 58.5
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 7.8e-107 391.3 404 50.5
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.7e-106 390.2 366 55.5
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.3e-106 389.8 364 55.2
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 5.1e-106 388.7 364 55.2
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 6.6e-106 388.3 347 56.5
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.5e-105 386.3 364 57.1
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 3.3e-105 386.0 364 56.9
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.6e-105 385.2 364 55.2
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 7.3e-105 384.8 364 54.9
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.1e-104 383.3 364 54.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.8e-104 382.9 365 55.1
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 3.6e-104 382.5 364 55.8
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.6e-104 382.5 378 53.7
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 4.8e-104 382.1 364 55.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 8.1e-104 381.3 366 56.6
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 1.1e-103 380.9 364 52.7
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.0e-103 379.0 365 54.8
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 5.3e-103 378.6 364 54.7
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 5.3e-103 378.6 365 54.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 2.0e-102 376.7 420 48.8
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.6e-102 376.3 365 52.9
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 2.6e-102 376.3 363 54.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 2.6e-102 376.3 364 53.0
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.8e-102 375.2 364 53.6
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-101 373.6 365 55.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 4.9e-101 372.1 347 56.8
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.4e-101 371.7 365 55.1
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.2e-100 369.4 365 54.8
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 2.1e-99 366.7 434 48.2
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.7e-99 366.3 364 52.5
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.0e-98 364.4 364 54.1
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 2.3e-98 363.2 374 52.7
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 3.9e-98 362.5 364 49.5
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.9e-97 360.1 365 53.7
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.9e-97 360.1 365 53.7
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.9e-97 360.1 364 51.1
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 3.3e-97 359.4 374 51.9
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 5.6e-97 358.6 364 49.2
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.7e-96 355.9 364 51.1
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 4.8e-96 355.5 390 49.7
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.2e-96 355.1 366 53.6
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.2e-96 355.1 366 53.8
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.4e-95 354.0 360 53.1
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 5.3e-95 352.1 367 52.6
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-94 350.5 360 53.9
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.5e-94 350.5 360 52.8
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 4.5e-94 349.0 400 49.2
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.3e-93 347.4 365 52.1
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.9e-92 343.6 349 51.9
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 3.2e-92 342.8 360 53.3
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.2e-92 342.4 369 50.9
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.2e-91 340.9 349 52.7
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.7e-91 339.7 409 47.9
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 3.5e-91 339.3 367 50.1
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.7e-89 332.0 351 52.1
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.4e-87 326.6 368 50.8
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.0e-86 323.6 403 47.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.2e-85 320.1 367 48.5
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 2.2e-85 320.1 252 61.9
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.9e-85 319.7 368 48.4
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.8e-85 319.3 367 48.0
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 8.4e-85 318.2 336 53.3
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.6e-83 312.4 367 48.5
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 3.0e-82 309.7 402 42.3
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.0e-82 309.7 367 47.7
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 3.9e-82 309.3 364 47.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.9e-81 307.0 364 47.0
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 3.3e-81 306.2 365 48.5
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 4.3e-81 305.8 367 47.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 7.4e-81 305.1 365 46.3
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.6e-80 303.9 364 44.0
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.8e-80 303.1 342 50.3
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.2e-78 297.7 368 46.5
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.9e-76 290.4 370 44.1
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.5e-76 288.9 326 50.0
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.5e-73 280.8 262 55.3
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.3e-73 279.3 309 49.8
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.3e-69 267.7 255 52.5
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.2e-69 266.9 275 50.9
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.1e-67 258.8 358 44.1
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.1e-65 254.6 364 40.4
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.5e-65 254.2 208 63.9
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 5.7e-65 252.3 349 43.6
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 7.4e-65 251.9 366 43.7
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.3e-63 245.7 171 67.8
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 5.3e-63 245.7 211 60.7
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.5e-62 243.0 248 50.0
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.6e-59 233.0 364 39.6
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.5e-57 227.6 335 41.5
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.7e-56 224.2 330 42.7
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 4.2e-52 209.5 145 71.0
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.2e-49 201.4 174 57.5
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.6e-46 191.0 145 67.6
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 3.2e-44 183.3 165 60.0
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.2e-44 182.2 164 59.1
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.3e-40 171.4 203 46.8
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.0e-37 161.8 288 37.8
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.0e-34 151.8 378 30.4
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.0e-34 149.8 191 41.4
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 8.9e-34 148.7 350 33.4
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.1e-31 141.7 168 44.6
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 5.4e-31 139.4 192 43.8
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 8.6e-29 132.1 131 56.5
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.5e-28 131.3 161 44.1
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 2.3e-26 124.0 249 31.7
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 2.6e-25 120.6 249 30.1
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.7e-24 117.9 84 66.7
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.0e-22 110.9 358 26.5
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 2.1e-19 100.9 74 63.5
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 4.7e-19 99.8 74 63.5
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 4.7e-19 99.8 74 63.5
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 8.1e-19 99.0 86 58.1
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.8e-18 97.8 156 36.5
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.3e-18 97.4 161 38.5
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.1e-18 97.1 120 47.5
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 1.2e-17 95.1 61 80.3
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 1.2e-17 95.1 61 78.7
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.9e-15 87.8 78 52.6
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.2e-14 85.1 135 39.3
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.6e-14 84.7 66 60.6
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 7.8e-14 82.4 56 73.2
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 1.7e-08 64.7 55 61.8
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 5.4e-07 59.7 81 40.7


User provided reference genes

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