Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 8.9e-229 796.6 398 100.0
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 1.1e-181 640.2 398 82.9
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 5.8e-180 634.4 398 82.4
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 1.5e-175 619.8 398 80.2
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 1.1e-165 587.0 399 76.2
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 1.4e-165 586.6 402 76.1
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 3.8e-163 578.6 399 74.7
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 3.9e-160 568.5 402 73.6
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 4.3e-159 565.1 394 74.1
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 5.9e-156 554.7 307 87.9
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 6.7e-152 541.2 400 68.2
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 8.8e-152 540.8 392 69.4
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 2.0e-151 539.7 404 68.3
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 2.2e-150 536.2 404 67.3
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 6.3e-150 534.6 401 66.6
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 1.1e-149 533.9 304 82.6
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 3.1e-149 532.3 303 83.5
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 6.9e-149 531.2 399 66.7
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 9.1e-149 530.8 393 68.4
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 1.2e-148 530.4 400 66.8
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 1.5e-148 530.0 399 67.2
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 1.5e-148 530.0 303 82.8
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 1.3e-147 526.9 313 79.9
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 6.5e-147 524.6 399 66.7
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 6.5e-147 524.6 304 80.9
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 8.5e-147 524.2 398 65.1
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 1.4e-146 523.5 397 66.5
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 2.5e-146 522.7 390 67.9
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 2.5e-146 522.7 396 67.7
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 1.2e-145 520.4 409 65.8
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 3.6e-145 518.8 399 65.7
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 7.9e-145 517.7 394 66.8
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 1.0e-144 517.3 394 67.0
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 1.0e-144 517.3 394 67.0
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 1.0e-144 517.3 385 68.1
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 1.0e-144 517.3 395 65.8
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 1.0e-144 517.3 391 66.5
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 1.4e-144 516.9 394 67.0
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 1.4e-144 516.9 402 66.4
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 1.8e-144 516.5 304 77.3
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 1.8e-144 516.5 398 64.1
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 3.0e-144 515.8 398 64.1
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 3.9e-144 515.4 311 78.8
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 5.1e-144 515.0 392 67.3
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 1.5e-143 513.5 394 65.0
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 1.5e-143 513.5 398 66.3
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 2.0e-143 513.1 395 65.3
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 2.0e-143 513.1 400 65.8
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 2.6e-143 512.7 396 65.9
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 2.6e-143 512.7 398 64.1
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 2.6e-143 512.7 394 65.7
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 3.3e-143 512.3 395 65.6
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 3.3e-143 512.3 387 66.1
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 5.7e-143 511.5 394 66.2
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 7.4e-143 511.1 393 64.9
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 7.4e-143 511.1 304 78.6
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 9.7e-143 510.8 313 76.4
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 2.2e-142 509.6 395 66.1
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 2.8e-142 509.2 312 76.6
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 3.7e-142 508.8 306 79.4
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 3.7e-142 508.8 394 65.0
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 6.3e-142 508.1 402 63.4
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 6.3e-142 508.1 392 66.8
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 8.2e-142 507.7 403 65.0
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 1.8e-141 506.5 306 75.8
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 2.4e-141 506.1 303 76.9
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 3.1e-141 505.8 304 77.3
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 1.7e-139 500.0 301 79.4
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 8.5e-139 497.7 302 76.8
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 3.2e-138 495.7 400 64.8
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 5.5e-138 495.0 299 77.6
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 2.1e-137 493.0 299 77.6
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 2.7e-137 492.7 302 77.5
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 4.7e-137 491.9 302 76.2
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 6.7e-136 488.0 405 64.4
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 1.1e-135 487.3 303 76.2
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 3.7e-134 482.3 304 76.0
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 3.7e-134 482.3 395 60.8
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 3.1e-133 479.2 297 77.4
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 4.1e-133 478.8 309 73.8
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 2.2e-131 473.0 302 74.5
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 2.1e-129 466.5 263 84.0
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 4.4e-127 458.8 398 59.0
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 1.8e-125 453.4 305 70.8
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 1.7e-123 446.8 344 65.1
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 3.6e-121 439.1 449 57.9
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 1.7e-118 430.3 303 68.0
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 1.1e-117 427.6 304 65.5
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 3.1e-117 426.0 252 79.8
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 4.2e-114 415.6 398 55.8
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 5.2e-112 408.7 358 60.1
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 1.1e-106 391.0 229 80.3
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 3.3e-106 389.4 395 53.9
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 3.6e-105 386.0 396 54.8
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 1.8e-104 383.6 546 42.3
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.2e-102 376.7 398 51.3
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 1.9e-101 373.6 222 79.7
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 5.2e-96 355.5 300 60.0
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 5.4e-85 318.9 275 60.4
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 6.2e-81 305.4 295 56.6
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 1.8e-72 277.3 167 76.0
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 4.4e-71 272.7 177 72.9
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 3.2e-69 266.5 225 56.4
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 3.2e-69 266.5 363 39.1
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 7.6e-63 245.4 319 44.2
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 2.3e-59 233.8 127 90.6
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 3.4e-55 219.9 126 80.2
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 1.8e-51 207.6 324 39.8
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 2.1e-49 200.7 345 36.8
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 1.1e-48 198.4 126 75.4
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.2e-39 168.3 97 80.4
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 2.9e-38 163.7 98 75.5
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 1.7e-33 147.9 84 83.3
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 3.1e-24 117.1 83 66.3
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 5.0e-22 109.8 65 78.5
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 2.6e-18 97.4 76 60.5
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 8.2e-17 92.4 56 82.1
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 5.7e-10 69.7 37 73.0
SEGI_14439 Sequoiadendron giganteum HOM05D006459 ORTHO05D385787 2.2e-09 67.8 64 54.7
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 2.7e-07 60.8 141 30.5
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 3.8e-06 57.0 30 86.7
Os02g0581500 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 8.5e-06 55.8 280 22.9


User provided reference genes

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