Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 6.0e-146 520.8 256 100.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 7.6e-133 477.2 256 90.6
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 2.3e-121 439.1 256 86.3
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 6.3e-119 431.0 256 85.2
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.0e-116 423.7 254 81.9
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.3e-116 423.3 256 82.0
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 4.7e-114 414.8 256 78.9
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.3e-111 406.8 256 78.9
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 3.5e-109 398.7 254 78.3
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.7e-108 396.4 252 78.2
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 8.5e-108 394.0 251 78.9
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.2e-106 390.2 256 75.8
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 1.6e-98 363.2 256 72.7
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 5.0e-92 341.7 256 69.9
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 7.0e-86 321.2 227 68.7
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.5e-75 286.2 254 55.5
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.5e-75 286.2 254 55.5
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 7.3e-75 284.6 214 68.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.6e-74 282.3 238 58.4
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 3.6e-74 282.3 256 55.1
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 8.0e-74 281.2 254 56.3
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 4.0e-73 278.9 256 55.5
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 6.8e-73 278.1 237 57.4
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.5e-72 276.9 238 58.0
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 2.6e-72 276.2 237 57.0
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 9.8e-72 274.2 255 54.1
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.7e-71 273.5 217 64.5
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 4.9e-71 271.9 254 54.7
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.9e-71 271.9 254 53.5
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 6.4e-71 271.6 254 55.5
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.3e-71 271.2 254 55.1
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.4e-70 270.4 254 54.3
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 4.1e-70 268.9 256 55.1
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.0e-68 264.2 254 52.4
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.7e-68 263.5 238 54.2
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.3e-68 263.1 270 53.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.3e-68 263.1 254 53.9
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 8.6e-68 261.2 241 52.7
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.5e-67 260.4 254 52.8
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 2.5e-67 259.6 235 54.0
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 9.5e-67 257.7 254 49.6
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.6e-66 256.9 238 52.9
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 8.1e-66 254.6 241 53.5
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.9e-65 251.1 254 53.9
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.5e-64 250.4 256 50.0
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.0e-64 250.0 190 63.7
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.6e-64 249.6 256 51.6
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 3.4e-64 249.2 238 51.7
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 3.4e-64 249.2 256 50.4
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 4.4e-64 248.8 256 50.8
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 5.8e-64 248.4 239 51.5
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 5.8e-64 248.4 255 53.7
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.7e-63 246.9 235 52.3
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.2e-63 246.5 233 54.9
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 2.9e-63 246.1 226 53.5
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 2.9e-63 246.1 235 53.2
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.9e-63 246.1 238 54.2
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 6.4e-63 245.0 256 49.6
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.1e-62 244.2 238 50.4
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 9.2e-62 241.1 233 53.6
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 9.2e-62 241.1 242 52.1
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.6e-61 240.4 258 50.0
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.6e-61 240.4 231 54.1
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.7e-61 239.6 258 50.4
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 2.7e-61 239.6 255 51.4
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.7e-61 239.6 254 50.4
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 2.7e-61 239.6 258 48.8
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.7e-61 239.6 239 51.0
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 4.6e-61 238.8 255 51.0
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 4.6e-61 238.8 255 51.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.6e-61 238.8 237 51.5
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 7.8e-61 238.0 256 50.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.0e-60 237.7 233 53.6
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.3e-60 237.3 236 49.2
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.3e-60 237.3 239 50.6
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.3e-60 237.3 255 52.5
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.3e-60 237.3 253 46.2
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.3e-60 237.3 238 52.1
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 2.3e-60 236.5 239 50.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.3e-60 236.5 254 49.2
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 5.1e-60 235.3 252 48.4
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 6.6e-60 235.0 239 50.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 6.6e-60 235.0 254 48.8
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 6.6e-60 235.0 187 64.2
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.1e-59 234.2 252 48.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.1e-59 234.2 237 51.1
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.9e-59 233.4 241 50.6
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.9e-59 233.4 256 46.1
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.9e-59 233.4 209 54.5
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 3.3e-59 232.6 256 48.0
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 5.6e-59 231.9 239 51.0
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 9.5e-59 231.1 230 52.2
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 9.5e-59 231.1 258 49.6
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.6e-58 230.3 210 55.2
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 6.2e-58 228.4 140 85.0
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 8.1e-58 228.0 239 49.4
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.4e-57 227.3 227 49.8
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.4e-57 226.5 230 49.1
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.1e-57 226.1 235 49.4
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.0e-57 225.7 241 49.0
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.3e-55 220.7 235 47.7
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.3e-55 220.7 235 47.7
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 8.4e-55 218.0 182 59.9
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.4e-54 217.2 256 48.4
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-54 217.2 259 43.6
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.2e-54 216.1 239 45.6
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 3.2e-54 216.1 215 49.8
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 9.2e-54 214.5 237 43.5
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.2e-53 214.2 236 48.7
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.6e-53 213.8 233 47.6
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.6e-53 213.8 235 46.4
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.1e-53 213.4 233 48.5
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.3e-52 209.9 253 45.5
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.3e-51 205.7 220 49.5
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.3e-51 205.7 220 49.5
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 9.6e-51 204.5 220 50.9
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.2e-50 204.1 223 50.2
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.6e-50 203.8 239 45.6
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.6e-50 203.8 238 45.4
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.1e-50 203.4 229 48.0
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.8e-49 200.3 240 44.2
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 2.4e-49 199.9 244 43.0
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 4.0e-49 199.1 245 44.5
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.2e-48 197.6 164 59.1
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.0e-48 196.8 236 44.5
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 2.2e-47 193.4 237 44.7
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.2e-46 189.5 180 53.3
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.2e-46 189.5 180 53.3
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.2e-46 189.1 207 47.3
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.2e-45 187.6 243 42.4
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.0e-44 183.0 230 44.8
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 5.6e-43 178.7 237 41.4
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 4.8e-42 175.6 226 42.5
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.3e-41 172.2 210 45.7
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.8e-36 157.1 262 36.6
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.9e-35 153.7 148 51.4
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.9e-35 153.7 242 35.5
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.6e-29 134.0 235 33.6
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.8e-28 130.6 101 59.4
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 4.8e-26 122.5 166 41.6
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 6.2e-26 122.1 190 40.0
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.1e-22 111.3 86 57.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.4e-22 110.9 86 61.6
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.2e-22 109.8 106 50.9
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.3e-20 104.4 206 30.6
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.9e-19 100.5 87 55.2
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 4.3e-19 99.4 150 38.0
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.6e-18 97.4 148 38.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.0e-15 88.2 147 34.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.1e-14 84.7 72 50.0
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.7e-10 70.9 75 52.0
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 9.4e-06 55.1 34 70.6


User provided reference genes

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