Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 7.7e-160 567.0 268 100.0
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 9.4e-142 506.9 267 88.8
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.7e-141 505.4 268 88.8
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.4e-140 503.1 267 88.0
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 9.8e-139 496.9 268 86.2
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.7e-138 496.1 269 86.2
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 3.5e-136 488.4 266 85.0
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.5e-134 483.0 266 83.5
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.5e-134 482.3 268 84.7
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 3.6e-133 478.4 268 83.6
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.8e-132 476.1 270 83.7
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 2.2e-130 469.2 264 82.6
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.4e-129 465.7 264 81.1
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 3.1e-129 465.3 268 82.8
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 4.5e-128 461.5 250 84.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 7.8e-128 460.7 255 80.8
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.0e-127 460.3 249 83.1
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.7e-127 459.5 235 88.1
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.8e-127 458.4 243 84.0
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 5.0e-127 458.0 254 82.3
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.5e-126 456.4 247 81.0
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.9e-126 456.1 254 81.5
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.9e-126 456.1 251 81.3
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 3.3e-126 455.3 252 82.1
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 4.3e-126 454.9 251 80.9
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.3e-126 454.9 251 81.3
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 5.6e-126 454.5 268 79.5
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 9.5e-126 453.8 251 80.9
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.2e-125 453.4 254 81.9
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.1e-125 452.6 251 81.3
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 3.6e-125 451.8 245 83.7
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 6.1e-125 451.1 251 82.1
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 6.1e-125 451.1 264 79.2
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 8.0e-125 450.7 252 81.3
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 8.0e-125 450.7 253 81.0
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.0e-124 450.3 252 82.1
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.8e-124 449.5 263 79.1
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.8e-124 449.5 248 82.7
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 2.3e-124 449.1 251 80.1
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 6.8e-124 447.6 245 81.6
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 8.9e-124 447.2 233 85.4
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 2.6e-123 445.7 241 82.2
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 5.8e-123 444.5 253 80.2
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 5.8e-123 444.5 252 79.8
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 7.5e-123 444.1 252 80.2
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 7.5e-123 444.1 252 80.6
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.7e-122 443.0 254 79.9
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.2e-122 442.6 236 82.2
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 6.4e-122 441.0 241 82.2
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.4e-121 439.9 236 83.1
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 2.4e-121 439.1 249 79.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.4e-121 439.1 264 77.7
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 4.1e-121 438.3 266 76.7
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.1e-121 438.3 266 75.2
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.1e-121 438.3 266 75.2
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.4e-121 438.0 266 75.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 7.0e-121 437.6 249 79.9
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 9.2e-121 437.2 249 79.9
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 9.2e-121 437.2 249 79.9
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.2e-120 436.8 249 79.9
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.6e-120 436.4 263 76.4
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 2.0e-120 436.0 237 82.7
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 3.5e-120 435.3 251 77.7
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 4.6e-120 434.9 237 81.9
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 6.0e-120 434.5 250 79.2
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 6.0e-120 434.5 232 82.8
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.3e-119 433.3 241 80.1
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.3e-119 433.3 261 74.3
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 2.3e-119 432.6 237 81.4
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 2.3e-119 432.6 239 79.9
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 3.9e-119 431.8 239 79.5
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-118 430.3 263 74.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.1e-118 430.3 253 75.5
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-118 430.3 264 74.6
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.5e-118 429.1 260 73.1
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 2.5e-118 429.1 263 75.3
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 4.3e-118 428.3 238 78.6
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.1e-117 426.0 243 76.5
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.8e-117 425.6 259 75.3
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.8e-117 425.6 264 74.2
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 3.6e-117 425.2 265 74.0
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.6e-117 425.2 256 75.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.6e-117 425.2 250 74.0
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 3.6e-117 425.2 237 78.5
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 6.2e-117 424.5 250 75.6
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 6.2e-117 424.5 246 76.4
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 8.0e-117 424.1 256 75.4
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 8.0e-117 424.1 251 75.3
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.3e-116 422.5 256 75.4
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.3e-116 422.5 243 77.8
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.1e-116 422.2 262 73.7
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 4.0e-116 421.8 244 74.2
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 5.2e-116 421.4 240 78.3
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 8.9e-116 420.6 260 75.0
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.9e-116 420.6 260 73.5
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.2e-115 420.2 252 74.2
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.5e-115 419.9 262 72.5
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.6e-115 419.1 256 73.4
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 4.4e-115 418.3 251 72.1
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.8e-115 417.9 237 75.9
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 7.5e-115 417.5 232 77.2
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 9.8e-115 417.2 254 73.6
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 9.8e-115 417.2 265 74.0
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 9.8e-115 417.2 253 73.9
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.7e-114 416.4 257 72.8
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 2.2e-114 416.0 265 69.8
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.9e-114 415.6 242 75.2
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.9e-114 415.6 241 74.7
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 3.7e-114 415.2 251 72.5
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 6.4e-114 414.5 252 75.0
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 6.4e-114 414.5 250 73.2
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 8.3e-114 414.1 254 72.0
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.1e-113 413.7 232 76.7
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.4e-113 413.3 250 73.6
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.4e-113 413.3 247 74.1
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.9e-113 412.9 249 74.3
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.9e-113 412.9 250 73.2
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.9e-113 412.9 232 77.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.9e-113 412.9 232 77.2
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.4e-113 412.5 256 69.5
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.2e-113 412.1 232 77.2
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.2e-113 412.1 241 75.9
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 5.4e-113 411.4 238 75.6
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 5.4e-113 411.4 252 73.4
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 9.2e-113 410.6 243 75.3
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.2e-112 410.2 249 73.1
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.0e-111 407.1 240 75.4
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.7e-111 406.4 252 73.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.0e-111 405.6 232 76.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.5e-110 403.3 255 70.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.5e-110 403.3 256 69.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.3e-110 401.7 233 76.0
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-109 400.2 240 74.6
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.6e-109 399.8 246 70.7
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.1e-109 399.4 251 68.1
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 1.4e-108 396.7 262 69.5
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.1e-108 395.6 218 80.7
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.2e-107 393.7 245 70.6
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.9e-105 386.3 241 73.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 4.1e-105 385.2 265 65.3
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 5.4e-105 384.8 207 85.5
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 5.4e-105 384.8 223 75.8
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.2e-99 367.1 260 64.2
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.4e-98 361.3 247 64.0
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 2.4e-97 359.4 222 71.2
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.3e-95 352.8 244 63.1
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 5.1e-95 351.7 226 67.7
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 2.5e-94 349.4 231 66.2
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.5e-91 340.1 229 63.8
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 3.4e-91 339.0 246 62.2
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 3.0e-87 325.9 267 60.3
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.7e-82 310.1 180 80.0
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.7e-80 302.8 261 55.9
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 4.0e-76 288.9 157 78.3
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.1e-73 280.8 149 80.5
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.1e-60 236.1 177 59.3
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.0e-54 216.9 226 47.3
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.4e-51 206.1 232 46.1
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.7e-45 186.0 208 48.6
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 9.4e-41 171.4 89 87.6
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 4.0e-31 139.4 107 62.6
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 1.2e-30 137.9 116 57.8
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.5e-25 120.2 140 46.4
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 3.7e-13 79.7 64 59.4
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 1.8e-12 77.4 51 52.9


User provided reference genes

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