Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 4.8e-154 547.7 269 100.0
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 2.4e-145 518.8 269 93.7
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.3e-143 513.1 269 91.8
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 7.3e-142 507.3 269 90.3
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 4.7e-141 504.6 269 90.0
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.0e-140 501.9 269 89.6
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.2e-139 500.0 267 89.5
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 3.4e-139 498.4 269 88.5
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.7e-138 496.1 268 88.1
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.9e-136 487.6 269 86.2
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 5.6e-134 481.1 267 86.5
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.2e-133 479.9 267 84.6
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-130 469.2 269 82.5
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 82.2
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.9e-130 468.0 269 81.8
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 82.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 81.8
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 2.0e-128 462.6 268 80.6
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.7e-128 462.2 269 84.8
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 7.8e-128 460.7 269 81.0
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 5.6e-126 454.5 269 80.3
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.2e-125 453.4 269 79.2
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.2e-125 453.4 269 79.6
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.6e-125 453.0 270 80.0
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.6e-125 453.0 269 79.2
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.8e-125 452.2 281 76.9
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 3.6e-125 451.8 269 79.2
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 3.1e-124 448.7 269 78.4
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 3.1e-124 448.7 269 78.8
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 6.8e-124 447.6 269 78.1
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.2e-123 446.8 269 79.2
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.5e-123 446.4 271 77.1
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.5e-123 446.4 269 78.4
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.0e-123 446.0 270 77.8
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.6e-123 445.7 271 78.6
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.4e-123 445.3 271 78.6
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 3.4e-123 445.3 267 78.7
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 9.8e-123 443.7 269 77.3
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.3e-122 443.4 269 78.1
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.7e-122 443.0 269 78.1
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 76.2
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 77.0
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 78.4
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 76.2
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 78.4
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 76.6
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 77.7
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 76.6
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.7e-122 441.8 269 76.6
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 4.9e-122 441.4 269 77.3
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 6.4e-122 441.0 269 77.7
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 1.1e-121 440.3 268 78.0
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.1e-121 440.3 269 76.6
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 76.2
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 76.6
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.4e-121 439.9 263 77.6
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 76.6
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 2.4e-121 439.1 269 77.7
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 3.2e-121 438.7 274 76.6
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 3.2e-121 438.7 269 76.6
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.1e-121 438.3 269 76.6
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 4.1e-121 438.3 270 76.3
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 4.1e-121 438.3 269 77.7
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 4.1e-121 438.3 269 77.0
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.4e-121 438.0 269 76.6
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 76.2
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 76.6
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 77.0
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 9.2e-121 437.2 266 76.7
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 9.2e-121 437.2 269 75.1
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 76.2
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 76.2
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 2.7e-120 435.6 269 74.3
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 2.7e-120 435.6 269 78.4
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 6.0e-120 434.5 269 75.8
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-119 433.3 269 75.8
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 2.3e-119 432.6 270 75.6
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 3.0e-119 432.2 269 74.3
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.9e-119 431.8 275 75.3
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 5.1e-119 431.4 269 74.3
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 6.6e-119 431.0 306 70.6
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.6e-119 431.0 275 74.9
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 8.6e-119 430.6 270 75.6
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.5e-118 429.9 271 75.3
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-118 429.5 275 74.5
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 75.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 75.1
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 4.3e-118 428.3 269 74.0
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 4.3e-118 428.3 269 74.3
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 7.3e-118 427.6 268 74.6
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 1.2e-117 426.8 270 74.8
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 1.6e-117 426.4 261 75.5
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 8.1e-117 424.1 269 75.8
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 75.1
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 3.1e-116 422.2 270 74.1
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 6.8e-116 421.0 244 82.8
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 6.8e-116 421.0 269 75.5
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 6.8e-116 421.0 269 75.8
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-115 419.5 269 73.2
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 3.4e-115 418.7 268 71.3
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 5.8e-115 417.9 269 73.2
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.3e-114 416.8 268 70.9
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 6.4e-114 414.5 269 74.0
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 8.4e-114 414.1 269 73.2
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 3.2e-113 412.1 269 72.5
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 4.1e-113 411.8 286 69.9
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 1.6e-112 409.8 252 78.6
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.5e-112 408.7 269 72.5
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 7.8e-112 407.5 269 72.5
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 3.0e-111 405.6 269 71.4
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 6.6e-111 404.4 269 70.6
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 6.6e-111 404.4 269 72.9
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.2e-109 400.2 275 72.0
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.2e-109 400.2 269 70.6
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 2.1e-109 399.4 269 72.1
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.1e-108 397.1 269 71.4
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-108 396.4 269 70.3
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 2.4e-108 396.0 269 68.4
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 4.0e-108 395.2 266 70.3
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-106 389.0 267 72.3
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-106 388.3 269 69.1
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 4.2e-105 385.2 269 70.6
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.4e-105 384.8 268 67.5
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.0e-104 381.3 276 65.6
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.0e-104 381.3 270 67.0
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.0e-104 381.3 270 65.9
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.8e-104 380.9 270 67.0
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-103 380.2 276 65.6
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-103 379.8 269 67.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 5.1e-103 378.3 235 76.6
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 6.6e-103 377.9 236 74.2
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 6.6e-103 377.9 269 67.7
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 8.7e-103 377.5 270 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.1e-102 377.1 270 65.9
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-102 377.1 271 66.1
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-102 376.7 276 65.6
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 5.6e-102 374.8 271 65.7
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 9.6e-102 374.0 269 65.8
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-101 372.9 271 65.3
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.1e-101 372.9 271 65.3
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 2.4e-97 359.4 270 63.3
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 5.4e-97 358.2 271 64.6
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 6.0e-96 354.8 212 76.4
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 7.9e-96 354.4 271 63.8
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 1.0e-95 354.0 270 62.6
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.1e-94 350.5 249 65.9
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.5e-94 350.1 211 80.6
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.2e-91 340.5 217 77.4
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.8e-85 319.3 197 77.2
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.1e-84 317.4 295 52.9
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 2.1e-80 303.1 270 55.2
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-79 300.8 189 72.0
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.8e-79 300.1 186 74.2
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 2.0e-59 233.4 127 86.6
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.5e-57 226.5 271 43.2
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.2e-56 224.2 189 59.3
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 2.6e-54 216.5 143 71.3
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.1e-52 209.5 181 59.7
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.1e-52 208.0 130 72.3
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 8.5e-50 201.4 271 40.6
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 7.2e-49 198.4 188 57.4
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 7.5e-38 161.8 269 38.3
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 4.8e-37 159.1 95 77.9
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 6.3e-37 158.7 275 35.6
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-31 140.2 69 95.7
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 4.0e-31 139.4 109 64.2
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 6.8e-31 138.7 88 73.9
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 5.7e-30 135.6 82 78.0
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.4e-28 130.2 77 76.6
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 3.4e-22 109.8 108 51.9
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.4e-20 104.4 68 73.5
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 5.4e-20 102.4 67 61.2
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.8e-14 82.4 82 47.6
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 1.6e-11 74.3 49 71.4
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 1.6e-11 74.3 49 71.4
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 2.7e-11 73.6 71 53.5
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 2.7e-11 73.6 61 52.5
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 9.5e-09 65.1 63 54.0
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.6e-08 64.3 63 52.4
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 1.8e-07 60.8 58 53.4
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.2e-06 58.2 44 56.8
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 7.5e-06 55.5 40 67.5


User provided reference genes

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