Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.3e-285 984.9 525 100.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 5.8e-252 874.0 544 84.4
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.9e-247 859.0 544 83.1
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 7.3e-239 830.5 543 80.3
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.0e-220 769.2 543 75.7
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.6e-214 749.6 545 73.4
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.4e-213 746.5 544 73.3
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 5.3e-213 744.6 530 74.5
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 9.9e-212 740.3 545 72.8
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 7.9e-209 730.7 541 71.5
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.0e-203 713.8 547 70.2
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.9e-203 712.2 547 69.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 3.2e-194 682.2 541 65.2
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 7.2e-194 681.0 541 68.9
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 3.1e-189 665.6 541 65.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.6e-188 662.5 541 63.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.0e-187 660.6 541 63.6
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 5.7e-183 644.8 546 62.8
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.4e-180 635.6 543 62.1
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.4e-180 635.6 543 62.1
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 4.5e-180 635.2 543 61.1
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.1e-178 630.6 546 62.1
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.5e-178 629.4 545 61.3
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 5.5e-178 628.2 547 61.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 7.9e-177 624.4 541 61.0
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.4e-176 623.6 542 62.5
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.3e-176 622.9 543 61.9
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 6.7e-176 621.3 544 61.8
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.8e-174 615.9 542 61.6
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 8.2e-174 614.4 541 61.2
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.4e-173 612.8 541 60.3
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.1e-173 612.5 540 60.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.1e-173 612.5 542 61.6
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 5.3e-173 611.7 542 60.9
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.2e-172 610.5 585 57.9
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.3e-171 607.1 542 61.4
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.7e-171 606.7 542 58.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-170 604.0 549 57.9
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-170 604.0 549 57.9
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 5.5e-170 601.7 585 56.8
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.1e-169 599.7 504 63.1
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.6e-169 599.0 542 61.4
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 6.1e-169 598.2 583 56.6
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 6.7e-168 594.7 540 58.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 6.7e-168 594.7 541 60.4
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.5e-167 593.6 541 58.8
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 3.3e-167 592.4 534 58.8
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.1e-165 587.4 544 57.9
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 4.5e-164 582.0 545 58.0
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 5.9e-164 581.6 544 57.7
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.8e-163 578.9 538 56.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 6.5e-163 578.2 543 57.3
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.2e-161 573.9 535 56.4
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.7e-161 572.8 542 57.0
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.7e-161 572.8 546 57.3
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.0e-160 570.9 545 56.3
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.3e-160 569.7 527 58.1
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.3e-160 569.7 541 56.4
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.8e-160 567.8 585 55.2
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.2e-159 567.4 541 57.3
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-159 566.2 585 54.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.7e-159 565.1 585 55.0
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 9.8e-159 564.3 541 57.1
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.3e-158 563.9 543 56.4
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 2.2e-158 563.1 542 56.6
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 2.2e-158 563.1 542 56.6
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 3.7e-158 562.4 542 56.6
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.8e-158 562.0 585 54.9
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.3e-158 561.6 585 54.2
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 4.1e-157 558.9 528 56.4
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 7.0e-157 558.1 541 56.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 7.7e-156 554.7 540 56.3
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.9e-155 552.7 538 53.7
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 6.5e-155 551.6 528 55.7
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.5e-154 550.4 542 53.5
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.2e-153 547.4 542 55.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-153 546.6 585 52.8
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 8.0e-153 544.7 542 52.6
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 6.8e-152 541.6 542 52.6
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 8.8e-152 541.2 542 52.4
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.0e-151 540.0 543 52.1
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.3e-150 537.3 543 52.1
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.7e-150 537.0 534 53.9
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 2.2e-150 536.6 542 52.6
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.8e-150 536.2 549 53.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.8e-150 536.2 528 54.5
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 3.7e-150 535.8 547 52.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.1e-149 534.3 543 51.7
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 3.1e-149 532.7 537 54.4
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.1e-149 532.3 517 57.1
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-145 519.2 542 51.5
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.5e-143 513.8 532 52.3
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.4e-141 507.3 543 51.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.0e-139 501.1 531 51.2
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 5.0e-139 498.8 569 50.8
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.1e-138 497.7 539 50.3
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 3.3e-138 496.1 546 51.5
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 3.1e-136 489.6 411 59.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.7e-134 482.6 321 77.3
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.5e-132 476.1 415 60.7
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 6.6e-131 471.9 548 48.9
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.6e-130 468.8 551 49.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 5.2e-120 435.6 272 83.8
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-118 430.3 425 59.3
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.2e-118 430.3 495 48.1
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 3.8e-118 429.5 357 60.5
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 7.1e-117 425.2 423 53.9
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 8.1e-113 411.8 548 44.2
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 5.8e-111 405.6 526 45.6
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.4e-109 401.0 422 53.6
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 4.5e-103 379.4 352 57.1
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-99 367.9 426 54.0
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 2.4e-96 357.1 577 37.3
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.9e-94 350.1 492 43.7
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 8.1e-89 332.0 321 56.4
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-88 331.6 465 43.2
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.0e-83 315.1 348 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 2.8e-81 307.0 502 36.3
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 7.6e-79 298.9 503 35.4
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 7.9e-76 288.9 229 68.6
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.9e-75 286.6 212 71.7
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.5e-74 283.9 522 35.6
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-74 283.5 487 39.0
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 9.7e-74 282.0 487 38.4
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 6.5e-70 269.2 488 34.2
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.7e-65 254.6 269 50.9
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.0e-54 218.8 123 90.2
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 3.8e-38 163.7 165 57.0
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 2.8e-36 157.5 209 49.3
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 3.6e-36 157.1 111 71.2
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.7e-34 149.8 103 68.9
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 9.8e-34 149.1 223 39.0
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.0e-30 136.7 102 63.7
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-29 134.0 116 56.0
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 5.6e-29 133.3 95 66.3
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.0e-27 129.0 90 71.1
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 3.4e-26 124.0 115 52.2
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.3e-25 122.1 222 36.9
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.7e-25 121.7 88 68.2
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 2.1e-20 104.8 336 25.6
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.2e-18 99.0 585 23.1
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 5.4e-16 90.1 523 25.6
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.6e-13 80.1 85 44.7
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 6.2e-12 76.6 120 39.2
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 5.2e-11 73.6 101 42.6
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 5.4e-08 63.5 83 47.0
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.6e-07 62.0 437 23.8
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.5e-07 60.8 126 35.7


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