Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 2263.8 1126 100.0
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 2145.9 1126 95.0
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 2078.5 1127 92.2
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2058.9 1127 91.2
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2055.0 1127 91.0
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 2040.8 1127 89.5
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 2010.3 1127 89.0
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 2009.6 1127 88.2
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 2009.2 1125 89.0
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1940.6 1077 90.0
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1902.1 1126 83.4
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1896.3 1128 82.9
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1893.2 1126 82.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1891.7 1126 82.9
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1880.5 1129 82.4
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1880.1 1128 82.5
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1876.3 1129 82.7
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1875.1 1126 82.2
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1875.1 1134 82.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1874.4 1126 82.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1872.1 1140 81.6
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1864.0 1126 81.3
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1863.6 1128 82.3
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1860.1 1127 81.7
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1854.7 1126 81.3
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1853.2 1140 81.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1847.8 1129 82.1
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1842.0 1128 81.3
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1838.9 1129 80.9
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1835.1 1128 81.0
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1834.7 1126 80.7
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1832.8 953 95.3
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1831.2 1128 80.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1824.7 1126 81.0
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1819.3 1099 82.4
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1812.3 1130 80.3
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1810.4 1131 79.6
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1806.6 1129 79.5
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1806.6 1124 79.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1806.2 1188 76.9
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1129 79.8
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1801.2 1130 78.7
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1799.6 1126 79.2
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1799.6 1132 78.4
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1798.1 1122 79.4
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1791.9 1132 78.0
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1787.7 1123 79.3
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1787.3 1126 78.6
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1783.5 1130 78.4
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1783.1 1129 79.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1783.1 1154 77.2
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1781.9 1127 79.8
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1773.4 1192 75.1
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1773.1 1127 78.4
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1772.7 1126 78.6
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1771.9 1127 77.8
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1769.2 1128 78.8
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1765.0 1129 77.4
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1761.5 1126 77.9
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1759.2 1080 81.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1751.1 1130 76.5
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1039 82.8
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1167 75.6
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1739.9 1199 73.6
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1721.1 1124 76.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1718.0 1131 75.2
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1125 75.9
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1705.6 1083 78.3
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1704.9 1251 70.9
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1699.1 1125 74.9
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1696.4 1124 75.3
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1694.1 1127 75.2
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1690.2 1125 75.3
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1682.5 1125 74.5
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1672.5 1321 67.1
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1669.8 1125 74.0
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1666.7 1127 75.1
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1665.6 1125 73.9
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1658.7 1017 84.0
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1656.7 1126 73.6
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1650.6 1126 73.6
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1649.4 1126 73.5
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1642.1 1158 73.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1634.4 1127 73.0
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1634.0 1127 73.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1612.4 1127 71.6
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1599.3 1164 71.0
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1589.7 1144 70.1
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1583.5 1158 69.9
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1548.1 1122 70.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1547.7 1131 68.9
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1527.3 1131 68.1
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1523.5 1167 68.5
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1521.1 1131 68.0
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1457.6 1114 68.0
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1420.6 873 81.0
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1419.1 845 82.8
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1415.6 841 82.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1366.3 864 77.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1303.9 1131 61.6
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1263.8 783 79.6
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1233.0 817 73.6
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1184.1 688 85.0
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1139.0 1148 51.4
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 9.9e-310 1067.0 1523 43.3
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 4.9e-309 1064.7 1122 50.6
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.3e-293 1013.4 1152 47.6
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.9e-278 961.4 1150 45.2
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.5e-270 935.3 675 68.0
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 6.3e-264 914.8 672 69.8
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.2e-262 910.6 532 85.9
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 7.7e-262 907.9 1381 38.3
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.6e-251 873.6 587 76.7
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-244 850.9 740 59.7
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 5.2e-234 815.5 612 70.1
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 6.0e-206 722.2 451 76.9
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.5e-198 696.4 438 80.8
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 4.2e-183 646.4 420 72.4
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.3e-180 636.7 592 53.4
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.5e-153 547.0 312 87.2
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.4e-146 525.0 451 60.5
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-135 488.8 380 71.1
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 7.3e-119 433.0 334 72.2
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 1.1e-103 382.5 1197 28.4
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.4e-90 339.0 794 31.5
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 4.3e-87 327.4 1454 23.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.4e-82 311.6 309 54.7
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-75 289.3 239 66.5
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 8.4e-75 286.6 180 76.7
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-67 263.1 201 73.1
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.3e-67 262.7 191 64.4
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.1e-66 259.6 186 67.2
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.9e-63 248.8 294 48.0
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 5.3e-61 240.7 206 57.3
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.2e-57 229.6 212 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.8e-56 225.7 313 37.4
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.0e-51 209.9 596 32.0
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 7.0e-45 187.2 248 44.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 9.1e-45 186.8 220 54.1
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.4e-42 179.5 220 51.4
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.5e-42 178.7 328 41.5
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.0e-40 173.3 189 49.2
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.9e-35 155.2 699 23.5
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 5.0e-35 154.5 87 87.4
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.0e-32 146.7 183 49.2
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 4.4e-31 141.4 87 82.8
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.4e-29 136.3 88 78.4
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.5e-26 125.6 85 63.5
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.7e-25 121.3 138 52.2
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 2.3e-24 119.0 65 83.1
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.8e-24 117.1 164 45.1
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.8e-21 109.4 74 71.6
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 5.4e-21 107.8 161 39.8
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 7.7e-20 104.0 69 75.4
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.8e-17 95.5 67 61.2
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.8e-17 95.5 60 73.3
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 5.2e-16 91.3 95 53.7
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.0e-15 89.4 80 58.8
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 5.7e-15 87.8 45 86.7
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.7e-14 86.3 58 75.9
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 2.8e-14 85.5 64 64.1
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 9.2e-13 80.5 48 79.2
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.8e-12 77.4 56 66.1
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 2.5e-10 72.4 55 60.0
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 9.5e-10 70.5 71 53.5
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 2.8e-09 68.9 49 61.2
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.8e-08 66.2 43 60.5
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 9.8e-07 60.5 34 70.6
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.2e-06 59.3 41 58.5
arahy.Tifrunner.gnm1.ann1.RG0L3L Arachis hypogaea HOM05D004297 ORTHO05D085181 6.4e-06 57.8 56 57.1


User provided reference genes

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