Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 9.1e-218 760.4 515 100.0
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 2.3e-160 569.7 516 81.0
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 6.7e-120 435.3 625 62.6
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 6.3e-102 375.6 549 56.3
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 1.4e-101 374.4 547 49.7
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 2.0e-100 370.5 530 55.8
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 5.5e-98 362.5 554 54.2
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 2.3e-96 357.1 543 55.2
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.8e-93 347.4 538 55.9
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.7e-91 340.9 539 54.2
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 8.3e-86 322.0 555 48.3
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 5.0e-83 312.8 552 52.4
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 3.7e-70 270.0 545 38.9
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 9.9e-55 218.8 559 34.9
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.3e-54 218.4 564 34.6
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.1e-53 215.3 558 33.3
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.5e-52 210.3 542 33.4
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 3.0e-51 207.2 526 36.1
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 2.5e-50 204.1 559 33.8
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.2e-49 201.8 554 33.9
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 2.1e-49 201.1 552 33.3
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.8e-49 200.7 559 33.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 2.8e-49 200.7 551 31.8
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.8e-49 200.7 551 31.9
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.6e-49 200.3 551 32.1
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 4.7e-49 199.9 556 33.1
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 6.2e-49 199.5 559 33.3
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 5.2e-48 196.4 547 33.5
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 3.4e-47 193.7 552 32.2
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 7.6e-47 192.6 559 32.0
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 9.9e-47 192.2 558 31.0
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 2.2e-46 191.0 537 33.1
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.4e-45 188.3 566 31.3
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.9e-45 188.0 546 32.6
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 5.4e-45 186.4 565 32.7
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 7.1e-45 186.0 538 32.5
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 9.3e-45 185.7 540 33.1
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.7e-44 184.1 539 32.5
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 3.5e-44 183.7 577 31.9
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 4.6e-44 183.3 554 33.4
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.6e-44 183.3 568 31.5
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.0e-43 182.2 539 32.3
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.3e-43 181.0 534 30.9
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 3.0e-43 180.6 532 32.7
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 3.0e-43 180.6 526 34.2
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 6.6e-43 179.5 525 33.5
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.1e-42 178.7 552 32.6
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.1e-42 178.7 547 31.1
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.5e-42 178.3 174 59.8
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 7.3e-42 176.0 181 56.4
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.6e-41 174.9 542 32.7
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.8e-41 174.1 156 64.1
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.8e-41 174.1 559 31.5
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 8.1e-41 172.6 537 30.9
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.0e-40 170.2 184 55.4
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 6.9e-40 169.5 161 58.4
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 7.6e-39 166.0 158 60.8
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 9.9e-39 165.6 521 30.5
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 9.9e-39 165.6 549 30.6
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.3e-38 165.2 180 51.7
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 1.7e-38 164.9 540 29.8
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 3.8e-38 163.7 535 30.5
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 1.9e-37 161.4 175 54.9
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.2e-37 160.2 524 32.3
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.2e-37 160.2 532 31.6
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 4.2e-37 160.2 116 72.4
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.2e-36 158.7 526 29.3
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.2e-36 158.7 524 31.1
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 2.1e-36 157.9 534 30.7
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.5e-36 157.1 526 30.4
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 7.9e-36 156.0 549 29.0
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 3.0e-35 154.1 516 28.9
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 5.1e-35 153.3 114 69.3
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 5.1e-35 153.3 179 51.4
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.7e-35 152.5 529 31.0
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.1e-34 152.1 175 54.3
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 5.6e-34 149.8 151 56.3
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 7.3e-34 149.4 173 50.9
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.3e-33 148.7 115 72.2
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 3.6e-33 147.1 597 28.1
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.4e-32 144.4 107 68.2
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 9.0e-32 142.5 117 70.1
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.0e-31 141.4 511 29.4
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.7e-30 138.3 118 65.3
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 5.4e-29 133.3 157 49.0
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 5.4e-29 133.3 122 59.0
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 6.0e-28 129.8 117 62.4
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 5.1e-27 126.7 164 47.6
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.5e-26 125.2 103 66.0
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 2.5e-26 124.4 118 54.2
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 8.1e-25 119.4 561 27.1
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 8.1e-25 119.4 110 56.4
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 1.4e-24 118.6 109 58.7
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 3.1e-24 117.5 579 25.9
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 4.0e-24 117.1 562 26.7
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 4.0e-24 117.1 572 27.3
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 4.0e-24 117.1 527 26.0
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.5e-23 115.2 171 43.3
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 7.6e-23 112.8 85 67.1
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 2.2e-22 111.3 538 27.1
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 4.9e-22 110.2 128 50.0
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 4.9e-22 110.2 534 25.1
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 4.9e-22 110.2 534 25.1
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 6.5e-22 109.8 154 45.5
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 6.5e-22 109.8 148 41.9
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 8.4e-22 109.4 550 25.1
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 8.4e-22 109.4 545 25.0
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.4e-21 108.6 186 38.7
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 4.2e-21 107.1 176 41.5
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.0e-19 102.4 68 70.6
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 8.7e-19 99.4 125 48.8
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.9e-18 98.2 112 47.3
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 8.2e-17 92.8 112 50.0
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 4.1e-16 90.5 147 39.5
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.2e-12 79.0 82 48.8
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 3.0e-11 74.3 110 37.3
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 8.7e-11 72.8 515 24.1
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 3.3e-10 70.9 109 34.9
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 4.3e-10 70.5 74 41.9
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.2e-09 68.2 81 43.2
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.2e-09 68.2 105 36.2
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 2.8e-09 67.8 71 47.9
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 3.7e-09 67.4 83 45.8
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 4.8e-09 67.0 146 29.5
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.1e-08 65.9 61 49.2
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.4e-08 65.5 65 46.2
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.4e-08 65.5 78 39.7
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 1.4e-08 65.5 75 44.0
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.4e-08 65.5 79 43.0
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.8e-08 65.1 137 32.8
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 1.8e-08 65.1 58 56.9
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.4e-08 64.7 66 43.9
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 2.4e-08 64.7 81 35.8
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 2.4e-08 64.7 54 53.7
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.4e-08 64.7 176 24.4
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.1e-08 64.3 53 58.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 4.1e-08 63.9 80 42.5
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 4.1e-08 63.9 77 39.0
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 5.3e-08 63.5 267 29.2
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 5.3e-08 63.5 149 27.5
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 6.9e-08 63.2 99 34.3
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 6.9e-08 63.2 86 36.0
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 9.0e-08 62.8 73 39.7
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.2e-07 62.4 58 51.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.2e-07 62.4 61 44.3
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 1.5e-07 62.0 83 36.1
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 1.5e-07 62.0 127 31.5
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 2.0e-07 61.6 54 50.0
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.0e-07 61.6 85 41.2
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.0e-07 61.6 55 49.1
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 2.6e-07 61.2 76 44.7
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 3.4e-07 60.8 106 32.1
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 3.4e-07 60.8 57 49.1
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.5e-07 60.5 73 38.4
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 5.9e-07 60.1 71 39.4
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 5.9e-07 60.1 63 38.1
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 5.9e-07 60.1 71 40.8
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 7.7e-07 59.7 77 36.4
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 7.7e-07 59.7 73 43.8
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 7.7e-07 59.7 63 38.1
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 1.0e-06 59.3 149 29.5
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.0e-06 59.3 72 41.7
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.0e-06 59.3 118 33.9
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.0e-06 59.3 176 26.7
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 1.7e-06 58.5 52 44.2
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 1.7e-06 58.5 126 29.4
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.7e-06 58.5 75 38.7
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 1.7e-06 58.5 70 40.0
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 2.2e-06 58.2 66 43.9
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 2.2e-06 58.2 74 41.9
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 2.2e-06 58.2 70 41.4
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 3.8e-06 57.4 55 52.7
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 5.0e-06 57.0 95 33.7
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 5.0e-06 57.0 64 40.6
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 5.0e-06 57.0 72 45.8
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 8.5e-06 56.2 75 42.7


User provided reference genes

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