Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.6e-139 498.8 269 100.0
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.6e-133 479.6 269 88.5
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 8.0e-133 477.2 281 85.4
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.4e-132 476.5 269 88.5
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 85.9
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.2e-129 465.3 269 84.8
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 4.1e-129 464.9 269 84.4
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 7.0e-129 464.2 269 84.0
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 6.0e-128 461.1 269 84.4
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 5.0e-127 458.0 265 91.7
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-126 456.1 269 82.9
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 2.0e-123 446.0 267 80.1
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 4.9e-122 441.4 268 79.1
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 78.8
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 78.8
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 3.2e-121 438.7 269 80.7
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 3.2e-121 438.7 269 79.2
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 4.1e-121 438.3 269 79.2
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 4.1e-121 438.3 269 78.1
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 84.4
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-120 436.4 269 78.1
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 77.3
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 78.4
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 3.5e-120 435.3 269 78.1
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.5e-120 435.3 269 77.7
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 3.5e-120 435.3 269 78.1
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 4.6e-120 434.9 269 78.1
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 1.3e-119 433.3 269 78.8
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 1.3e-119 433.3 269 78.1
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.7e-119 433.0 269 77.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.7e-119 433.0 271 77.5
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.7e-119 433.0 263 78.7
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.7e-119 433.0 269 77.7
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.7e-119 433.0 269 77.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.3e-119 432.6 269 77.3
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.0e-119 432.2 271 77.5
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 3.9e-119 431.8 271 76.8
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 5.1e-119 431.4 274 77.7
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 6.6e-119 431.0 269 76.2
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.6e-119 431.0 269 76.2
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 8.6e-119 430.6 269 76.6
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.6e-119 430.6 269 76.6
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.5e-118 429.9 269 76.6
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 2.5e-118 429.1 267 77.5
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 75.8
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 83.6
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 7.3e-118 427.6 269 81.4
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.2e-117 426.8 269 77.0
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 75.5
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 76.2
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 2.1e-117 426.0 269 75.1
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.1e-117 426.0 269 75.1
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 2.8e-117 425.6 269 74.3
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 2.8e-117 425.6 268 76.9
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.8e-117 425.6 270 75.9
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 2.8e-117 425.6 269 75.1
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 3.6e-117 425.2 269 77.0
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 3.6e-117 425.2 269 74.3
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 4.7e-117 424.9 269 82.2
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.7e-117 424.9 269 83.3
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.7e-117 424.9 275 74.9
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.7e-117 424.9 275 74.5
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 6.2e-117 424.5 270 76.7
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.1e-117 424.1 275 74.9
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 8.1e-117 424.1 267 77.2
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 8.1e-117 424.1 269 75.8
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 8.1e-117 424.1 269 75.5
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.1e-116 423.7 270 74.8
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.8e-116 422.9 269 82.9
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.8e-116 422.9 269 75.1
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 3.1e-116 422.2 266 75.6
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 3.1e-116 422.2 269 75.5
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.1e-116 422.2 269 75.5
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 74.7
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 73.6
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.8e-116 421.0 269 75.5
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.8e-116 421.0 269 75.5
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 8.9e-116 420.6 268 76.5
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.2e-115 420.2 269 74.3
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.2e-115 420.2 269 76.2
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.5e-115 419.9 269 74.0
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.5e-115 419.9 269 81.8
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.4e-115 418.7 269 74.0
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.4e-115 418.7 271 74.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 7.6e-115 417.5 306 69.9
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 9.9e-115 417.2 269 73.6
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.7e-114 416.4 269 73.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.7e-114 416.4 269 81.0
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.8e-114 415.2 269 80.7
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.4e-114 414.5 269 74.3
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.4e-113 413.3 270 73.7
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 1.9e-113 412.9 268 73.1
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 2.4e-113 412.5 269 73.6
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 4.1e-113 411.8 270 73.3
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 5.4e-113 411.4 270 73.3
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.1e-113 411.0 269 80.7
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 7.1e-113 411.0 269 73.6
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 9.2e-113 410.6 244 83.2
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.2e-112 410.2 237 90.7
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.1e-112 409.5 269 75.5
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.7e-112 409.1 270 73.0
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 2.7e-112 409.1 269 72.1
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 2.7e-112 409.1 269 72.1
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.7e-111 406.4 269 73.6
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.3e-111 406.0 267 75.3
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 8.6e-111 404.1 269 71.4
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.3e-110 402.1 269 71.7
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 7.3e-110 401.0 286 69.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 9.6e-110 400.6 269 71.0
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.8e-109 399.1 261 72.8
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.8e-108 396.4 269 69.5
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 5.2e-108 394.8 252 77.4
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 2.6e-107 392.5 269 70.6
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.9e-105 386.3 268 67.5
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 7.1e-105 384.4 275 70.2
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.6e-104 383.3 269 69.1
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.7e-103 379.8 268 66.0
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 8.7e-103 377.5 266 67.7
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.6e-102 374.0 272 72.1
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 1.1e-100 370.5 269 66.5
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.4e-100 370.2 235 74.9
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.1e-100 369.0 270 67.4
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.9e-100 367.9 269 69.1
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.0e-100 367.5 270 67.0
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.5e-99 366.7 269 67.3
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 2.6e-99 365.9 271 71.6
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.8e-99 364.8 269 66.9
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.8e-99 364.8 267 64.8
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 7.6e-99 364.4 271 64.9
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.6e-99 364.4 271 64.9
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 9.9e-99 364.0 269 69.1
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-98 362.5 271 64.6
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.8e-98 362.1 276 63.8
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.4e-98 361.3 276 64.1
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 8.4e-98 360.9 270 64.8
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-97 360.1 276 64.1
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.2e-97 358.6 270 62.2
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.4e-97 358.2 271 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.2e-96 357.1 269 64.7
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.6e-96 356.7 269 64.7
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.1e-94 350.5 270 63.7
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.9e-94 349.7 212 79.7
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 5.6e-94 348.2 271 65.7
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 2.1e-93 346.3 270 61.9
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 2.8e-93 345.9 270 63.3
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 3.3e-86 322.4 217 76.0
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.6e-85 320.1 249 60.2
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.7e-85 318.9 211 73.0
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.1e-81 307.4 295 52.9
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.7e-80 302.8 197 75.1
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.8e-77 292.7 187 75.9
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-76 290.4 189 73.0
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 3.6e-72 275.8 269 52.0
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 2.9e-58 229.6 143 75.5
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.9e-50 203.0 189 55.0
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.6e-48 196.1 272 39.7
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-46 190.7 130 70.0
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 7.5e-46 188.3 162 59.9
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 2.4e-44 183.3 127 70.9
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-43 181.0 169 59.8
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 2.0e-43 180.3 269 40.5
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 4.5e-43 179.1 267 37.5
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 4.1e-36 156.0 88 84.1
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 3.5e-35 152.9 129 63.6
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.5e-33 146.7 82 82.9
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 5.5e-33 145.6 278 33.5
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 7.2e-33 145.2 109 68.8
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 1.5e-30 137.5 77 80.5
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.5e-25 120.2 68 82.4
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 4.1e-20 102.8 108 49.1
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.4e-20 102.4 69 69.6
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 7.5e-14 82.0 65 60.0
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 9.2e-12 75.1 57 63.2
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.6e-11 74.3 57 61.4
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.9e-09 67.4 67 43.3
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 2.8e-08 63.5 51 60.8


User provided reference genes

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