Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 3.4e-49 198.0 96 100.0
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.2e-31 138.3 90 77.8
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 5.2e-26 120.9 92 67.4
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 7.8e-22 107.1 88 67.0
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 7.8e-22 107.1 88 67.0
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.5e-20 102.1 93 60.2
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.4e-15 85.5 91 57.1
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.2e-14 83.2 90 53.3
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 3.5e-14 81.6 81 53.1
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 7.8e-14 80.5 86 47.7
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.0e-13 80.1 81 53.1
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.3e-13 79.7 91 53.8
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.7e-13 79.3 81 50.6
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 3.0e-13 78.6 80 50.0
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-13 78.6 90 52.2
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-13 78.6 90 50.0
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 3.9e-13 78.2 86 48.8
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.1e-13 77.8 83 49.4
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.5e-12 76.3 74 55.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.9e-12 75.9 75 50.7
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.9e-12 75.9 86 46.5
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.5e-12 75.5 73 56.2
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.3e-12 75.1 74 54.1
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 4.3e-12 74.7 82 52.4
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 5.6e-12 74.3 63 57.1
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 7.3e-12 73.9 79 50.6
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.2e-11 73.2 81 48.1
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.2e-11 73.2 85 47.1
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.2e-11 73.2 82 50.0
Psat6g015640 Pisum sativum HOM05D004288 ORTHO05D004997 1.2e-11 73.2 79 50.6
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 2.1e-11 72.4 83 45.8
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.6e-11 71.6 81 44.4
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.6e-11 71.6 86 47.7
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.1e-10 70.1 81 48.1
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.4e-10 69.7 72 48.6
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.4e-10 69.7 89 46.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.4e-10 69.7 80 45.0
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.8e-10 69.3 85 45.9
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.8e-10 69.3 61 55.7
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.8e-10 69.3 70 50.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.4e-10 68.9 81 48.1
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 3.1e-10 68.6 87 44.8
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 3.1e-10 68.6 74 48.6
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.0e-10 68.2 83 44.6
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.0e-10 68.2 88 43.2
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 4.0e-10 68.2 73 47.9
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 4.0e-10 68.2 75 48.0
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 4.0e-10 68.2 82 48.8
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.2e-10 67.8 83 44.6
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 6.8e-10 67.4 76 51.3
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 6.8e-10 67.4 83 51.8
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 6.8e-10 67.4 87 46.0
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 6.8e-10 67.4 85 43.5
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 8.9e-10 67.0 75 45.3
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.2e-09 66.6 76 46.1
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.2e-09 66.6 104 37.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.5e-09 66.2 90 45.6
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 1.5e-09 66.2 79 48.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.5e-09 66.2 68 51.5
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.0e-09 65.9 81 46.9
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 2.6e-09 65.5 72 54.2
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 3.4e-09 65.1 80 42.5
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.4e-09 65.1 68 50.0
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 3.4e-09 65.1 73 46.6
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 4.4e-09 64.7 79 41.8
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 4.4e-09 64.7 70 47.1
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.8e-09 64.3 64 51.6
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 7.6e-09 63.9 73 47.9
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 7.6e-09 63.9 73 47.9
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.9e-09 63.5 73 43.8
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 9.9e-09 63.5 40 67.5
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 9.9e-09 63.5 40 67.5
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.3e-08 63.2 53 56.6
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.3e-08 63.2 62 50.0
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.7e-08 62.8 64 53.1
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.7e-08 62.8 52 57.7
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.2e-08 62.4 68 45.6
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 2.2e-08 62.4 63 55.6
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.2e-08 62.4 82 45.1
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.8e-08 61.6 38 65.8
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.9e-08 61.2 63 54.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 4.9e-08 61.2 61 47.5
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 4.9e-08 61.2 80 43.8
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.9e-08 61.2 73 45.2
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 6.4e-08 60.8 82 37.8
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 8.4e-08 60.5 74 44.6
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 8.4e-08 60.5 92 40.2
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 8.4e-08 60.5 52 48.1
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 8.4e-08 60.5 89 46.1
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 8.4e-08 60.5 62 53.2
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.1e-07 60.1 88 39.8
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.4e-07 59.7 91 37.4
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.4e-07 59.7 56 50.0
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.4e-07 59.7 70 40.0
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.9e-07 59.3 87 40.2
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.9e-07 59.3 80 42.5
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.9e-07 59.3 80 42.5
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 1.9e-07 59.3 67 46.3
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.9e-07 59.3 64 45.3
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 2.4e-07 58.9 64 51.6
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.4e-07 58.9 80 42.5
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 2.4e-07 58.9 79 43.0
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 2.4e-07 58.9 86 45.3
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 2.4e-07 58.9 50 46.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.4e-07 58.9 71 47.9
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 3.2e-07 58.5 42 61.9
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 3.2e-07 58.5 71 45.1
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.2e-07 58.5 80 42.5
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 3.2e-07 58.5 67 50.7
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 4.2e-07 58.2 47 59.6
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 4.2e-07 58.2 76 47.4
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.2e-07 58.2 63 50.8
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 4.2e-07 58.2 69 39.1
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 4.2e-07 58.2 85 34.1
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 7.1e-07 57.4 82 40.2
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 9.3e-07 57.0 59 50.8
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.2e-06 56.6 40 60.0
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.2e-06 56.6 65 47.7
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.2e-06 56.6 62 41.9
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.2e-06 56.6 75 46.7
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.2e-06 56.6 61 47.5
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 2.1e-06 55.8 44 61.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.1e-06 55.8 87 41.4
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.1e-06 55.8 80 41.2
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 2.1e-06 55.8 37 64.9
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 2.7e-06 55.5 62 46.8
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 2.7e-06 55.5 85 40.0
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 7.8e-06 53.9 59 50.8
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 7.8e-06 53.9 75 42.7
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 7.8e-06 53.9 74 43.2


User provided reference genes

Program Settings