Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.2e-289 999.2 526 100.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.8e-149 533.5 516 63.8
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 6.4e-134 481.9 686 49.4
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 3.2e-125 453.0 603 52.6
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 2.6e-111 406.8 532 50.0
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.1e-77 295.0 586 39.1
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.2e-73 280.8 605 38.3
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 5.9e-71 272.7 614 38.6
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 2.2e-62 244.2 637 34.9
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.9e-61 241.1 623 35.8
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 7.2e-61 239.2 628 37.3
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 8.0e-52 209.1 755 29.9
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 5.7e-50 203.0 547 34.9
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 4.5e-47 193.4 730 29.9
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 5.9e-47 193.0 475 35.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.7e-46 191.4 750 29.7
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 3.8e-46 190.3 360 45.8
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 7.2e-45 186.0 697 30.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 9.5e-45 185.7 656 30.8
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.1e-44 184.5 616 32.1
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.7e-44 184.1 573 33.5
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 4.7e-44 183.3 735 28.7
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.1e-44 183.0 690 30.4
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 4.0e-43 180.3 662 31.9
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.2e-41 174.5 625 32.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.1e-40 172.2 640 30.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 4.1e-40 170.2 671 28.5
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.3e-38 165.2 693 29.9
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 5.0e-38 163.3 579 29.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 6.6e-38 162.9 730 29.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 4.3e-37 160.2 565 30.3
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 4.3e-37 160.2 553 29.8
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 4.3e-37 160.2 696 28.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 5.6e-37 159.8 582 29.6
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 9.5e-37 159.1 586 29.4
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.6e-36 158.3 721 28.3
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.6e-36 158.3 721 28.3
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 3.6e-36 157.1 663 28.5
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.7e-36 156.8 446 35.2
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 4.7e-36 156.8 673 29.3
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 5.2e-35 153.3 725 28.4
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.5e-34 151.8 725 29.4
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.6e-34 151.0 559 31.8
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 5.7e-34 149.8 186 49.5
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 7.5e-34 149.4 591 29.9
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.3e-33 148.7 436 34.4
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.1e-32 145.6 182 50.5
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.4e-32 143.3 182 48.4
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 9.2e-32 142.5 678 26.3
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.6e-31 141.7 568 29.0
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.7e-31 141.0 661 29.7
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 5.9e-31 139.8 178 50.6
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 5.9e-31 139.8 689 27.4
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.3e-30 138.7 749 26.4
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.9e-30 137.1 187 47.1
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 6.6e-30 136.3 625 28.2
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 8.6e-30 136.0 522 28.5
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.1e-29 135.6 593 29.0
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 7.3e-29 132.9 677 27.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.2e-28 132.1 623 28.9
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.2e-28 132.1 167 50.9
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 2.1e-28 131.3 654 26.5
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 3.6e-28 130.6 539 29.3
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.7e-28 130.2 167 50.3
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 6.2e-28 129.8 750 25.6
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.0e-27 129.0 183 46.4
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.4e-27 128.6 781 26.1
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.0e-27 127.1 167 49.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.8e-27 126.3 176 48.9
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 8.9e-27 125.9 160 51.9
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 2.6e-26 124.4 620 27.9
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.6e-26 124.4 414 32.9
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.6e-26 124.4 169 48.5
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 4.4e-26 123.6 620 27.6
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 7.5e-26 122.9 165 46.7
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 7.5e-26 122.9 566 27.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.5e-26 122.9 348 33.3
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.3e-25 122.1 687 27.9
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.9e-25 120.9 159 47.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 6.4e-25 119.8 619 28.9
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.1e-24 119.0 160 47.5
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 5.4e-24 116.7 202 41.1
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 5.4e-24 116.7 213 40.8
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 5.4e-24 116.7 133 52.6
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-23 115.5 194 43.3
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 1.2e-23 115.5 180 46.1
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.0e-23 114.8 154 49.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.0e-22 112.5 430 31.6
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.3e-22 112.1 118 54.2
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 2.3e-22 111.3 691 25.8
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.0e-22 110.9 588 28.7
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 3.9e-22 110.5 166 45.8
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 3.9e-22 110.5 581 26.9
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 8.6e-22 109.4 560 27.3
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-21 109.0 555 27.6
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.3e-21 107.5 171 41.5
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 3.3e-21 107.5 466 28.1
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.3e-21 107.1 368 31.5
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.3e-21 107.1 183 42.6
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.6e-21 106.7 592 27.7
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 6.2e-20 103.2 163 47.2
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 8.1e-20 102.8 168 45.2
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 2.3e-19 101.3 185 43.8
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 3.1e-19 100.9 169 44.4
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.0e-18 98.2 681 25.8
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.0e-18 98.2 155 43.9
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.4e-18 97.1 171 43.3
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 7.5e-18 96.3 583 26.9
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 7.5e-18 96.3 593 25.3
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 7.5e-18 96.3 160 43.8
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 9.8e-18 95.9 683 24.5
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.9e-17 93.6 159 41.5
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-16 92.4 130 45.4
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.4e-16 92.0 133 45.1
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.9e-16 91.7 73 64.4
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.9e-16 91.7 161 40.4
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.9e-16 91.7 265 31.7
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.9e-16 91.7 173 42.2
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.2e-16 90.9 162 42.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 4.1e-16 90.5 576 26.4
VMungo0720G2920 Vigna mungo HOM05D005042 ORTHO05D006080 5.4e-16 90.1 203 35.0
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 2.1e-15 88.2 223 33.6
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.1e-15 88.2 90 54.4
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.3e-14 85.5 215 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 3.0e-14 84.3 168 38.1
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 3.0e-14 84.3 183 35.0
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 6.6e-14 83.2 96 47.9
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 6.6e-14 83.2 167 37.1
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 8.6e-14 82.8 164 40.9
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 8.6e-14 82.8 166 41.0
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 8.6e-14 82.8 166 41.0
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.9e-13 81.6 87 50.6
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 4.3e-13 80.5 95 47.4
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.3e-13 80.5 392 27.6
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 5.6e-13 80.1 286 29.0
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 5.6e-13 80.1 87 49.4
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 9.5e-13 79.3 503 26.8
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-12 79.0 135 40.0
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.6e-12 78.6 110 43.6
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 3.6e-12 77.4 166 39.8
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 3.6e-12 77.4 166 39.8
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 8.1e-12 76.3 143 39.9
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.4e-11 75.5 106 47.2
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 2.0e-10 71.6 151 37.7
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.0e-06 59.3 140 34.3


User provided reference genes

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